Pinned Repositories
porerefiner
A tool for managing your pores
bioproject_to_srr_2
BlastyKhan
BLAST as an API-driven web service, because Torsten basically dared me to
cookiecutter-cookiecutter
Template Repository for making new cookiecutter templates.
crashfrog
Info and miscellaneous about me.
device-cookiecutter
This is a Cookiecutter template for developing an electronic device - it includes a workflow for PCB development using KiCad or Circuitmaker and 3D printable enclosure development using OpenSCAD and NopSCADLib.
Dispatch
A semi-automated assembly pipeline for MiSeq and IonTorrent FASTQ data. Supports modular, parameterized trimming operations and multi-strategy assembly comparison using QUAST.
TableBlep
A WebGL virtual table top
sra_exp
Short script to lookup SRA Experiment accessions from SRA Run accessions
crashfrog's Repositories
crashfrog/TableTrip
A table-editing framework using Dash and your ORM
crashfrog/BlastyKhan
BLAST as an API-driven web service, because Torsten basically dared me to
crashfrog/porerefiner-config-cookbook
Notifier/Job/Submitter examples for PoreRefiner
crashfrog/kosudoku
I intend to wrap this up in proper packaging and a more featured CLI.
crashfrog/Virulence_Factor_Characterization
Virulence Factor Characterization in Metagenomes
crashfrog/snp-pipeline
SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organisms sequenced from samples of interest to food safety.
crashfrog/asmngs18
ASMNGS18 - 2018 Conference Details
crashfrog/avro_gen
Avro record class and reader generator
crashfrog/cdc-lyve-set-gt
GalaxyTrakr implementation of CDC's Lyve-SET
crashfrog/nullarbor
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
crashfrog/miso-lims
MISO: An open-source LIMS for NGS sequencing centres
crashfrog/beryl
Beryl - bioinformatics database manager
crashfrog/qfs
prototype NCBI query file system
crashfrog/VecID
Stand-alone system for IDing vectors and pathogens
crashfrog/WatchosGrande
Watchos Grande, the cheesy simple process watchdog
crashfrog/TheExpanse
DarkMultiPlayer - A multiplayer mod for Kerbal Space Program
crashfrog/CV
crashfrog/dag_core
CFSAN DAG-Core
crashfrog/TreeToReads
Draft version of a pipeline
crashfrog/basecase
A distributed workflow/job app for Django.
crashfrog/circlator
A tool to circularize genome assemblies
crashfrog/sif
crashfrog/Dispatch
A semi-automated assembly pipeline for MiSeq and IonTorrent FASTQ data. Supports modular, parameterized trimming operations and multi-strategy assembly comparison using QUAST.
crashfrog/qa_core_stub
Testing stub for CFSAN GIMS QA/QC Core
crashfrog/libdivsufsort
A lightweight suffix-sorting library
crashfrog/andi
Efficient Estimation of Evolutionary Distances
crashfrog/bootsie
Automatically exported from code.google.com/p/bootsie
crashfrog/jfsan
JIFSAN training materials
crashfrog/platter
An extension for Genhom SLims and wsgiDAV to expose sequencing data over a webDAV virtual filesystem with semantic pathways.
crashfrog/programming_club
Github Repo for the FDA-CFSAN-ORS-DM Programming Club