Pinned Repositories
alnvu
Reformat and condense multiple sequence alignments to highlight variability
aws_batch
Moves data to and from AWS Batch system and monitors logs
bioinformatics
Bioinformatics scripts and notes
csvpandas
Interface to manipulate csv files as Pandas DataFrames.
dnaJ
Creation of a dnaJ reference database
medirect
multiprocessed ncbi edirect
moose
dna/rna alignment classifier
rrat
Ribosomal RNA Allele Tree
sra_submission
SRA, Bioproject and Biosample walk through with accompanying scripts
taxmagick
Tools for managing ncbi taxonomic data
crosenth's Repositories
crosenth/medirect
multiprocessed ncbi edirect
crosenth/csvpandas
Interface to manipulate csv files as Pandas DataFrames.
crosenth/sra_submission
SRA, Bioproject and Biosample walk through with accompanying scripts
crosenth/taxmagick
Tools for managing ncbi taxonomic data
crosenth/alnvu
Reformat and condense multiple sequence alignments to highlight variability
crosenth/aws_batch
Moves data to and from AWS Batch system and monitors logs
crosenth/bioinformatics
Bioinformatics scripts and notes
crosenth/bioy
crosenth/dnaJ
Creation of a dnaJ reference database
crosenth/moose
dna/rna alignment classifier
crosenth/rrat
Ribosomal RNA Allele Tree
crosenth/DendroPy
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
crosenth/docker
crosenth/docker-kraken2
Kraken2 with reference database
crosenth/dotfiles
My env configs
crosenth/epa-ng
Massively parallel phylogenetic placement of genetic sequences
crosenth/explate
Generic Python experiment analysis template.
crosenth/infernal_docker
http://eddylab.org/
crosenth/moose_chrome
Chrome extension for Moose Classifier
crosenth/resume
My résumé
crosenth/scons_batch
SCons Aws Batch plugin
crosenth/taxtastic
Create and maintain phylogenetic "reference packages" of biological sequences.
crosenth/ya16sdb
A curated subset of 16S rRNA sequences from NCBI
crosenth/ya16sdb-dash
Dash app for the ya16sdb reference database