cruknagano

CGP-Somatic-Docker

Dockerised and simplified version of SeqWare-CGP-SomaticCore

dkfz_dockered_workflows

This is the container that houses the Roddy-based component provided by DKFZ for the DEWrapper workflow

muse_tabix

Create muse.vcf.gz.tbi from pcawg

OxoG-Dockstore-Tools

A CWL version of the Seqware OxoG workflow. This repository also contains scripts and dockerfiles used by the stand-alone versions of these components.

pcawg-gatk-cocleaning

Increase number of cpu and memory

pcawg-minibam

pcawg_delly_workflow

A mirror of https://bitbucket.org/weischen/pcawg-delly-workflow

sga-annotate-docker

Docker file for sga annotation pipeline

wdl-pcawg-bwa-mem-workflow

WDL implementation of https://github.com/ICGC-TCGA-PanCancer/Seqware-BWA-Workflow

dkfz_dockered_workflows

This is the container that houses the Roddy-based component provided by DKFZ for the DEWrapper workflow

cruknagano/muse_tabix

Create muse.vcf.gz.tbi from pcawg

cruknagano/CGP-Somatic-Docker

Dockerised and simplified version of SeqWare-CGP-SomaticCore

cruknagano/dkfz_dockered_workflows

This is the container that houses the Roddy-based component provided by DKFZ for the DEWrapper workflow

cruknagano/OxoG-Dockstore-Tools

A CWL version of the Seqware OxoG workflow. This repository also contains scripts and dockerfiles used by the stand-alone versions of these components.

cruknagano/pcawg-gatk-cocleaning

Increase number of cpu and memory

cruknagano/pcawg-minibam

cruknagano/pcawg_delly_workflow

A mirror of https://bitbucket.org/weischen/pcawg-delly-workflow

cruknagano/sga-annotate-docker

Docker file for sga annotation pipeline

cruknagano/wdl-pcawg-bwa-mem-workflow

WDL implementation of https://github.com/ICGC-TCGA-PanCancer/Seqware-BWA-Workflow