ICGC-TCGA-PanCancer/dkfz_dockered_workflows

Issues

• SGE download issue

  #33 opened 3 years ago by yazbeck
  1

• SGE issues

  #5 opened 8 years ago by manuelgarvan
  6

• question about ICGC_CNSM_VCF files

  #32 opened 4 years ago by glei1103
  0

• Singularity?

  #31 opened 5 years ago by R-Cardenas
  0

• runwrapper.sh -gt

  #30 opened 5 years ago by ZeepXanflorp
  0

• Dockerfile Build error

  #11 opened 6 years ago by garyluu
  6

• Increase memory setting in configuration xml files

  #25 opened 6 years ago by junjun-zhang
  1

• Replace references to /var/spool/cwl with $(runtime.outdir)

  #13 opened 6 years ago by denis-yuen
  1

• Use provided `.bai` file instead of creating it in the workflow itself

  #22 opened 6 years ago by junjun-zhang
  1

• ERROR: unable to send message to qmaster using port 6444

  #14 opened 7 years ago by bogdang989
  2

• Any feel for how long it takes this workflow to process the bams from a single donor?

  #6 opened 8 years ago by mdperry
  3

• Not compatible with test data, fails on purity-ploidy step

  #7 opened 8 years ago by denis-yuen
  2

• missing files when running the workflow

  #4 opened 8 years ago by manuelgarvan
  0

• running external data

  #2 opened 8 years ago by manuelgarvan
  1

• Multiple errors

  #3 opened 8 years ago by manuelgarvan
  2