csbl-usp
Employing systems biology approaches to understand the molecular mechanisms of infectious diseases and vaccine-induced immunity.
CSBLBrazil
Pinned Repositories
CEMiTool
Co-Expression Module Identification Tool (CEMiTool) official repository
covid19_model
Shiny App for decision making based on this blogpost (https://medium.com/@tomaspueyo/coronavirus-act-today-or-people-will-die-f4d3d9cd99ca)
csbl_chikungunya_edgeR
csbltools
This package is intended to unify the most commonly used functions in the CSBL.
fcoex
The fcoex package implements an easy-to use interface to co-expression analysis based on the FCBF (Fast Correlation-Based Filter) algorithm. it was implemented especifically to deal with single-cell data. The modules found can be used to redefine cell populations, unrevel novel gene associations and predict gene function by guilt-by-association. The package structure is based on the CEMiTool package.
mdp
MetaVolcanoR
Gene expression meta-analysis visualization tool
networgly
Fast network visualization with WebGL
NIPT
OpenTargets_drug_repositioning
The scripts in this repository perform the following tasks necessary for drug repositioning using Open Targets:
csbl-usp's Repositories
csbl-usp/CEMiTool
Co-Expression Module Identification Tool (CEMiTool) official repository
csbl-usp/MetaVolcanoR
Gene expression meta-analysis visualization tool
csbl-usp/OpenTargets_drug_repositioning
The scripts in this repository perform the following tasks necessary for drug repositioning using Open Targets:
csbl-usp/fcoex
The fcoex package implements an easy-to use interface to co-expression analysis based on the FCBF (Fast Correlation-Based Filter) algorithm. it was implemented especifically to deal with single-cell data. The modules found can be used to redefine cell populations, unrevel novel gene associations and predict gene function by guilt-by-association. The package structure is based on the CEMiTool package.
csbl-usp/NIPT
csbl-usp/csbl_chikungunya_edgeR
csbl-usp/mdp
csbl-usp/covid19_model
Shiny App for decision making based on this blogpost (https://medium.com/@tomaspueyo/coronavirus-act-today-or-people-will-die-f4d3d9cd99ca)
csbl-usp/csbltools
This package is intended to unify the most commonly used functions in the CSBL.
csbl-usp/networgly
Fast network visualization with WebGL
csbl-usp/pipelines
Bioinformatics pipelines
csbl-usp/PubScore
R package for calculating the literature score for a given gene / gene list in relation to the biomedical literature.
csbl-usp/reannotator-microarray-probes
csbl-usp/analysis_example
csbl-usp/code-R
csbl-usp/collapseR
csbl-usp/csbl-usp.github.io
csbl-usp/evolution_of_knowledge
Repository containing all scripts and files necessary to reproduce the analyses and figures in the paper "Evolution of knowledge on genes of inflammatory, infectious and psychiatric diseases: meta-research of the scientific literature using IBM Watson for Drug Discovery."
csbl-usp/FCBF
Repository for R package to perform Fast Correlation Based Filtering (Information Theory based feature selection) with applications to single-cell and bulk to transcriptomic analysis set ups.
csbl-usp/file_example
csbl-usp/inflamma_repositioning
Repository containing the scripts used to produce the results reported in the paper "Drug repositioning for chronic inflammatory diseases using a network medicine approach"
csbl-usp/REbola
csbl-usp/ScienceFamily
Series of skills for laboratory use of Alexa Voice User Interface implemented using Node.js
csbl-usp/WDD_drug_repositioning
Script to perform drug repositioning using Watson for Drug Discovery data