csbl-usp/PubScore

R package for calculating the literature score for a given gene / gene list in relation to the biomedical literature.

PubScore

PubScore is an R package for free enrichment analysis.

By comparing a list of terms to PubMed, PubScore allows you to obtain estimates of how your list of genes relates to any topic!

To use the package:

install.packages(devtools)
devtools::install_github("csbl-usp/PubScore")

For R 3.6 users

The package is limited to R > 4.0.0 in the description due to Bioconductor requirements. To access a 3.6 compatible version, please install to the fork https://github.com/lubianat/PubScore

install.packages(devtools)
devtools::install_github("lubianat/PubScore")