Pinned Repositories
contrafold-se
CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data
docker
Collection of docker images built for various tools
generative-models
Collection of generative models, e.g. GAN, VAE in Pytorch and Tensorflow.
pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
TF_binding
code for exploring TF binding models
wWigIO
Python library for fast bigWig signal extraction (derived from ngslib)
pybedtools
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
ataqc
csfoo's Repositories
csfoo/contrafold-se
CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data
csfoo/wWigIO
Python library for fast bigWig signal extraction (derived from ngslib)
csfoo/docker
Collection of docker images built for various tools
csfoo/generative-models
Collection of generative models, e.g. GAN, VAE in Pytorch and Tensorflow.
csfoo/pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
csfoo/TF_binding
code for exploring TF binding models