cshasha

cshasha's Stars

• immunogenomics/TCAT_analysis

  Code repository for TCAT analyses

  Language:Jupyter Notebook62

• katiejolly/nationalparkcolors

  R package for color themes inspired by national parks

  Language:R22016

• dcjones/proseg

  Probabilistic cell segmentation for in situ spatial transcriptomics

  Language:Rust442

• chrka/rwfs

  Simulated annealing for feature selection

  Language:Python4

• MSingerLab/COMETSC

  COMET Single-Cell Marker Detection tool

  Language:Python317

• powellgenomicslab/scPred

  scPred package for cell type prediction from scRNA-seq data

  Language:R7416

• zhouzilu/ctpnetpy

  The Python package of cTP-net

  Language:Python42

• deweylab/CellO

  CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

  Language:Jupyter Notebook6413

• NVIDIA-Genomics-Research/rapids-single-cell-examples

  Examples of single-cell genomic analysis accelerated with RAPIDS

  Language:Jupyter Notebook32468

• stephenturner/msigdf

  Molecular Signatures Database (MSigDB) in a data frame

  Language:R1715

• wckdouglas/diffexpr

  Porting DESeq2 into python via rpy2

  Language:Python6721

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.2k350

• chanzuckerberg/scRNA-python-workshop

  All the action is on the course webpage -->

  Language:Jupyter Notebook2718

• theislab/single-cell-tutorial

  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

  Language:Jupyter Notebook1.4k457

• Bioconductor/OrchestratingSingleCellAnalysis

  Content for the OSCA Book.

  Language:Dockerfile6536

• iSEE/iSEE_instances

  A gallery-repository to store the commands to reproduce entire analyses for iSEE instances on public/own data

  4

• scverse/scanpy-tutorials

  Scanpy Tutorials.

  Language:Jupyter Notebook186115

• pachterlab/kb_python

  A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing

  Language:Python15023

• PacktPublishing/Bioinformatics-with-Python-Cookbook-Second-Edition

  Bioinformatics with Python Cookbook Second Edition, published by Packt

  Language:OpenEdge ABL302193

• seq-lang/seq

  A high-performance, Pythonic language for bioinformatics

  Language:C++69850

• openclimatefix/website

  Source of the Open Climate Fix website.

  Language:JavaScript1411

• energy-analytics-project/energy-dashboard

  Data Science for the Energy Sector

  Language:Jupyter Notebook185

• broadinstitute/infercnv

  Inferring CNV from Single-Cell RNA-Seq

  Language:R561166

• genomicsclass/book

  Compiled and pretty version of labs

  193129

• DataCircles/Data-Science-Study-Group

  WiDS-Machine Learning Study Group

  42

• DataCircles/Machine_Learning_Projects

  Machine Learning Projects

  Language:Jupyter Notebook22

• sajal2692/data-science-portfolio

  Portfolio of data science projects completed by me for academic, self learning, and hobby purposes.

  Language:Jupyter Notebook1.1k442

• DataCircles/DataScienceInterviewQuestionsClassifier

  A classifier for Data Science interview questions

  Language:Jupyter Notebook95

• Gibbons-Lab/american_gut

  Project materials to analyze the American Gut data set.

  Language:Jupyter Notebook1

• mpesesky/susceptibility-prediction

  Language:Python3