czbiohub-sf/tabula-muris-senis

Missing genes in raw data

DennisPost10 opened this issue · 1 comments

DennisPost10 commented

Hi there,
Are there unprocessed h5ad files available for droplet and facs containing all genes (especially mt-genes)?
I am looking for something like the "tabula-muris-senis-droplet-official-raw-obj.h5ad" file but with all genes.

Thanks,
Dennis

aopisco commented

Hi @DennisPost10,

there is such object for FACS (s3://czb-tabula-muris-senis/Data-to-reproduce-figures/mutation-analysis-objs/adata_genecode_counts_for_gatk_with_metadata_and_embeddings.h5ad) but not for droplet.

I hope this helps!