AWS fastq file metadata

[gouinK]

Hi all, thank you for providing this great dataset on AWS. I was wondering if there is a metadata or annotation file that describes each of the samples in the 'senis/10x/fastq/' folder? Thanks!

[aopisco]

hi @gouinK, are you referring to the data in Tabula Muris (this repo) or Tabula Muris Senis (https://github.com/czbiohub/tabula-muris-senis)?

[gouinK]

Yes the Tabula Muris Senis one

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On Thu, Nov 12, 2020, 8:44 PM aopisco ***@***.***> wrote: hi @gouinK <https://github.com/gouinK>, are you referring to the data in Tabula Muris (this repo) or Tabula Muris Senis ( https://github.com/czbiohub/tabula-muris-senis)? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#230 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AIABFHH6KSIVISLF3PVLV73SPS2RXANCNFSM4TUBFBPQ> .

[aopisco]

@gouinK the most complete metadata is the csv in here https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE149590
do you want to get the fastq files and rerun them through cellranger or other pipeline but get the correct metadata?

[gouinK]

Perfect, that looks like I can get the annotation from the prefix on the cell barcode, thanks so much!
Yes I plan to process this with cellranger v4 so that I can compare some of your mammary gland data to my own generated data.