czmilanna/nanoforms

The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056

Nanoforms

Minimal Requirements

Minimal Software Requirements

• Linux, recommended Ubuntu 20.04 LTS
• Docker
• docker-compose
• Make

Minimal Hardware Requirements

• Processor: 8 core 64bit
• Memory: 64GB RAM
• Disk Space: 1TB

Deployment

Step 1. Building images and deploying containers

Change CHANGE_ME secrets in docker-compose.env file and run below command:

sudo make deploy

Step 2. Admin User creation

Run below command:

sudo make create_super_user

Step 3. Accessing the Application

The application should be available at http://127.0.0.1:7337/

Removal

Run below command:

sudo make destroy