dna-assembly
There are 40 repositories under dna-assembly topic.
Edinburgh-Genome-Foundry/DnaCauldron
:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
Edinburgh-Genome-Foundry/Primavera
:cherry_blossom: Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
Edinburgh-Genome-Foundry/DnaWeaver
A route planner for DNA assembly
Lattice-Automation/primers
A PCR primer tool for DNA assembly flows
Edinburgh-Genome-Foundry/Caravagene
🎨 Python library to plot multi-part genetic constructs
Edinburgh-Genome-Foundry/CUBA
🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software
Lattice-Automation/synbio
a DNA assembly library
Edinburgh-Genome-Foundry/BandWitch
💫 Computer-aided DNA assembly validation and identification from restriction digests.
Edinburgh-Genome-Foundry/genedom
Batch domestication of genetic parts with Python
bioinfologics/Pseudoseq.jl
Fake genomes, fake sequencing, real insights.
Edinburgh-Genome-Foundry/tatapov
:paw_prints: DNA overhang misannealing data for Python
Edinburgh-Genome-Foundry/GoldenHinges
:link: Short overhangs design for DNA assembly
czmilanna/nanoforms
The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056
Edinburgh-Genome-Foundry/kappagate
:crystal_ball: Predict DNA assembly clone validity rates - powered by Kappa
Edinburgh-Genome-Foundry/zymp
:scissors: Design compact restriction sites arrays (python utility)
Edinburgh-Genome-Foundry/dab
:point_right: EGF Design and Build, the Foundry's DNA design ordering portal
Edinburgh-Genome-Foundry/egf-shared-documents
:books: Shared slideshows, courses, etc. from the EGF
JBEI/dnada
DNAda is a web application that integrates the J5 DNA assembly software with robotic liquid handlers
Edinburgh-Genome-Foundry/igem-registry-downloader
Download the full iGEM database of parts
Meristembio/Weaver
Open source web app for DNA design and management
Edinburgh-Genome-Foundry/saboteurs
:bomb: Identify elements impairing success accross group experiments.
hmjeon/PERDIX
Programmed Eulerian Routing for DNA Design using X-overs
avivace/dna-recombination
Computer Science B.Sc thesis paper and final stage experience. Approaching a Computational Biology Problem with integer linear programming tools.
intbio-ncl/BiomationScripterLib
A Python library to assist with scripting bio-automation protocols
hmjeon/METIS-pub
Designer three layered wireframe DNA origami
LasVegasCoder/Data-Science
Data Science Tools, Libraries, Classes and Functions
ZackSkeet/CELLO-DNA-Computing
Projects written in CELLO
hmjeon/TALOS
Three-dimensional, Algorithmically-generated Library of DNA Origami Shapes
ishanshukla97/extras
Implementation of random algorithms
jvrana/pyblast
BLAST wrapper for python that handles circular sequences
NavpreetDevpuri/DNAc
DNAc is a programming language for DNAs.
pablocarderam/genetargeter
Creates a construct developed by the Niles Lab at MIT, designed to deliver a 3' UTR post-transcriptional regulatory element payload to a specific given gene in Plasmodium falciparum.
mfileman/Circular-String
This was a project for my bioinformatics class. We studied the circular string problem and its application to bioinformatics and sequence generation / reconstruction. This project solves the circular string problem taking in an integer k, by creating a DeBruijn graph and generating a Euler cycle from it (the edges corresponding to all possible binary k-mers).
sblabkribb/Automated-protocol
Automated synthetic biology protocols with ot2
sghignone/canu
openjdk:8 based release of CANU, a PacBio assembler