Pinned Repositories
basenji2-pytorch
PyTorch implementation of Basenji2.
bisb-bootcamp-2021-module09
CENG-176
Data cleaning, analysis, and visualization for Chemical Engineering labs.
datahacks2020
Science Track: A Case Study of Race in Diabetes Healthcare
dlaub_helpers
Helper functions for my work, mainly bioinformatics related.
dlaub_setup
Setup files for me.
github-slideshow
A robot powered training repository :robot:
TritonHacks-Data-Viz
Data visualization/data science starter kit for TritonHacks 2021, a high-school hackathon.
GenVarLoader
Pipeline for efficient genomic data processing.
SeqData
Annotated sequence data
d-laub's Repositories
d-laub/basenji2-pytorch
PyTorch implementation of Basenji2.
d-laub/CENG-176
Data cleaning, analysis, and visualization for Chemical Engineering labs.
d-laub/TritonHacks-Data-Viz
Data visualization/data science starter kit for TritonHacks 2021, a high-school hackathon.
d-laub/bisb-bootcamp-2021-module09
d-laub/datahacks2020
Science Track: A Case Study of Race in Diabetes Healthcare
d-laub/dlaub_helpers
Helper functions for my work, mainly bioinformatics related.
d-laub/dlaub_setup
Setup files for me.
d-laub/github-slideshow
A robot powered training repository :robot:
d-laub/lucid
d-laub/med264_aou_asd_drug_disparities
d-laub/MethylDrift
Bayesian inference of biological age of tissues subject to differential methylation drift.
d-laub/conformal-prediction
Lightweight, useful implementation of conformal prediction on real data. (a.k.a. conformal inference)
d-laub/dlm-transfer-learning
DNA language model transfer learning.
d-laub/genome-loader
Pipeline for efficient genomic data processing.
d-laub/hyena-dna
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
d-laub/med263_wi22_metagenomics_tutorial
Metagenomics tutorial for MED 263
d-laub/minfi_pipeline
Scripts for running minfi to process Illumina methylation arrays.
d-laub/MotifData
Motif representation and analysis toolkit in Python
d-laub/PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
d-laub/SeqData
Annotated sequence data
d-laub/SeqPro
Genomic Sequencing Preprocessing toolkit
d-laub/sgkit
Statistical genetics toolkit
d-laub/ushuffle
A useful tool for shuffling biological sequences while preserving the k-let counts