d-laub

d-laub's Stars

• vibansal/HapCUT2

  software tools for haplotype assembly from sequence data

  Language:C20636

• brendangregg/FlameGraph

  Stack trace visualizer

  Language:Perl17.3k2k

• plasma-umass/scalene

  Scalene: a high-performance, high-precision CPU, GPU, and memory profiler for Python with AI-powered optimization proposals

  Language:Python12.1k398

• google-deepmind/optax

  Optax is a gradient processing and optimization library for JAX.

  Language:Python1.7k188

• FlorianDietz/comgra

  A tool to analyze and debug neural networks in pytorch. Use a GUI to traverse the computation graph and view the data from many different angles at the click of a button.

  Language:Python2689

• cyz-ai/infomin

  Official codes for Scalable Infomin Learning, NeurIPS 2022

  Language:Jupyter Notebook111

• Genentech/gReLU

  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

  Language:Python21923

• d-laub/basenji2-pytorch

  PyTorch implementation of Basenji2.

  Language:Python111

• flamegraph-rs/flamegraph

  Easy flamegraphs for Rust projects and everything else, without Perl or pipes <3

  Language:Rust4.7k144

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.7k628

• DixianZhu/GAR

  Gradient Aligned Regression via Pairwise Losses

  Language:Jupyter Notebook62

• jxbz/modula

  Scalable neural net training via automatic normalization in the modular norm.

  Language:Jupyter Notebook1148

• google/deepsomatic

  DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.

  14015

• selective-inference/Python-software

  Python software for selective inference

  Language:Python5137

• YS-L/flamelens

  Flamegraph viewer in the terminal

  Language:Rust2452

• freeseek/score

  Tools to work with GWAS-VCF summary statistics files

  Language:C1028

• vsbuffalo/granges

  A Rust library and command line tool for working with genomic ranges and their data.

  Language:Rust946

• fatiando/pooch

  A friend to fetch your data files

  Language:Python62473

• ChristopherWilks/megadepth

  BigWig and BAM utilities

  Language:C++929

• fastlmm/bed-reader

  A library for easy, fast, and efficient reading & writing of PLINK Bed files

  Language:Rust739

• astrofrog/fast-histogram

  :zap: Fast 1D and 2D histogram functions in Python :zap:

  Language:C26628

• odelaneau/shapeit5

  Segmented HAPlotype Estimation and Imputation Tool

  Language:C++6911

• AI-sandbox/gnomix

  A fast, scalable, and accurate local ancestry method.

  Language:Python8314

• owkin/PyDESeq2

  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

  Language:Python58462

• mikefarah/yq

  yq is a portable command-line YAML, JSON, XML, CSV, TOML and properties processor

  Language:Go12.2k598

• HigherOrderCO/Bend

  A massively parallel, high-level programming language

  Language:Rust17.4k429

• HigherOrderCO/HVM

  A massively parallel, optimal functional runtime in Rust

  Language:Cuda10.5k397

• Marsilea-viz/legendkit

  Legend made easy for matplotlib

  Language:Python21

• rust-ndarray/ndarray

  ndarray: an N-dimensional array with array views, multidimensional slicing, and efficient operations

  Language:Rust3.6k307

• google-research/tuning_playbook

  A playbook for systematically maximizing the performance of deep learning models.

  27k2.2k