d3b-center/annoFuse

Issues

• How to understand FusionName

  #105 opened 4 months ago by ShixiangWang
  2

• Feature request: Add updated oncogene list

  #106 opened 4 months ago by jharenza
  1

• Bug: duplication issue

  #107 opened 4 months ago by jharenza
  1

• add support for hg19

  #50 opened 6 months ago by kgaonkar6
  3

• Bug: First function "fusion_standardization" not working for star_fusion input

  #85 opened 6 months ago by mapostolides
  5

• pipline failed

  #102 opened 6 months ago by km-2021
  1

• Error with annotation

  #104 opened 6 months ago by jharenza
  5

• Read expression file

  #103 opened a year ago by km-2021
  1

• Bug: `fusion_driver()` returns multiple `DomainRetained` values

  #100 opened 2 years ago by kelseykeith
  2

• Bug: Files missing from inst/extdata on master

  #96 opened 2 years ago by sickler-alex
  4

• Bug: missing ref files and shinyFuse demo file

  #90 opened 2 years ago by jharenza
  9

• Add pub to readme

  #94 opened 2 years ago by jharenza
  3

• Update feature: annoFuse summary plot in shiny

  #92 opened 4 years ago by kgaonkar6
  1

• Feature request: customizable plot summary

  #93 opened 4 years ago by kgaonkar6
  0

• Bug: annoFuse::annoFuse_single_sample with no filtered fusion calls errors out

  #86 opened 4 years ago by kgaonkar6
  0

• rename shinyFuse table download

  #84 opened 4 years ago by jharenza
  4

• Bug: issue loading tidyr::one_of()

  #83 opened 4 years ago by kgaonkar6
  0

• Add templates for issues and PRs

  #30 opened 4 years ago by jharenza
  2

• add shinyFuse launch date

  #80 opened 4 years ago by jharenza
  1

• add authors to package

  #72 opened 4 years ago by jharenza
  2

• add kinase domain retention info to putative oncogenic file

  #66 opened 4 years ago by jharenza
  4

• cleanup of gene reference lists

  #62 opened 4 years ago by jharenza
  3

• update conjoin genes filter

  #68 opened 4 years ago by jharenza
  3

• tcga validation nb and files

  #65 opened 4 years ago by kgaonkar6
  0

• update instructions for filtering of numeric columns

  #61 opened 4 years ago by jharenza
  2

• spanningDelta cutoff 100 for demo file

  #60 opened 4 years ago by kgaonkar6
  3

• Internal function to check for standardized columns for plots

  #14 opened 4 years ago by kgaonkar6
  14

• filtering on shiny server

  #58 opened 4 years ago by jharenza
  4

• possibly make spanning difference an option

  #40 opened 4 years ago by jharenza
  2

• update intergenic logic

  #54 opened 4 years ago by jharenza
  2

• Examples to showcase the usage of functions

  #17 opened 4 years ago by federicomarini
  6

• add info on shiny server about file input requirements

  #53 opened 4 years ago by jharenza
  2

• add text for "about" info in shiny app

  #25 opened 4 years ago by jharenza
  7

• update shiny server url name

  #51 opened 4 years ago by jharenza
  1

• source R script names to represent function calls

  #13 opened 4 years ago by kgaonkar6
  10

• filter dropdown for BreakpointLocation

  #47 opened 4 years ago by kgaonkar6
  2

• minor column name fixes

  #29 opened 4 years ago by jharenza
  1

• Example data for shiny_fuse

  #44 opened 4 years ago by kgaonkar6
  4

• Quick numeric summary returned after processing files

  #16 opened 4 years ago by federicomarini
  3

• opt in annoFuseSingleSample

  #15 opened 4 years ago by kgaonkar6
  1

• update breakpoint plots

  #39 opened 4 years ago by jharenza
  4

• add junctionreadcount to plot filter

  #42 opened 4 years ago by jharenza
  2

• domain plots and recurrence plots for shiny_fuse

  #12 opened 4 years ago by kgaonkar6
  2

• breakpoint plots - some error out

  #37 opened 4 years ago by jharenza
  10

• update default columns to display in shinyFuse

  #32 opened 4 years ago by jharenza
  2

• download table not working

  #24 opened 4 years ago by jharenza
  12

• additional column features for FusionExplorer

  #23 opened 4 years ago by jharenza
  4

• filtering list for shiny app

  #22 opened 4 years ago by jharenza
  11

• table summary errors

  #19 opened 4 years ago by jharenza
  4

• breakpoint plots not showing up in dev branches

  #21 opened 4 years ago by jharenza
  2