danielchang2002
Genetics PhD Student @ Stanford | Prev CS @ University of Minnesota | Genomics + ML
Stanford
Pinned Repositories
5038W_Final
deepdep_reanalysis
Chang et al., Ridge regression baseline model outperforms deep learning method for cancer genetic dependency prediction
DogBreedClassification
FecalMetabolomics
GMWI-webtool
Chang et al., GMWI-webtool: a user-friendly browser application for assessing health through metagenomic gut microbiome profiling, Bioinformatics (2023).
GMWI2
Chang and Gupta et al., Gut Microbiome Wellness Index 2 Enhances Health Status Prediction from Gut Microbiome Taxonomic Profiles, Nature Communications (2024).
MinesweeperBot
Simple minesweeper bot created with python and pyautogui
Pygame
Simple games created with Pygame
TaxiBGC_2022
Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Secondary Metabolite Production Potential in Metagenomes, mSystems (2022).
tetris_ai
Tetris environment with AI algorithms for CSCI 4511W at the University of Minnesota
danielchang2002's Repositories
danielchang2002/TaxiBGC_2022
Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Secondary Metabolite Production Potential in Metagenomes, mSystems (2022).
danielchang2002/GMWI-webtool
Chang et al., GMWI-webtool: a user-friendly browser application for assessing health through metagenomic gut microbiome profiling, Bioinformatics (2023).
danielchang2002/GMWI2
Chang and Gupta et al., Gut Microbiome Wellness Index 2 Enhances Health Status Prediction from Gut Microbiome Taxonomic Profiles, Nature Communications (2024).
danielchang2002/5038W_Final
danielchang2002/deepdep_reanalysis
Chang et al., Ridge regression baseline model outperforms deep learning method for cancer genetic dependency prediction
danielchang2002/GMHI-pipeline
danielchang2002/5038W
danielchang2002/5481_final
danielchang2002/5481_supplementary
danielchang2002/5611_hw
danielchang2002/5611_IK
danielchang2002/5611_PDE
danielchang2002/5611_projects
danielchang2002/bioconda-recipes
Conda recipes for the bioconda channel.
danielchang2002/danielchang2002
danielchang2002/danielchang2002.github.io
danielchang2002/danielchang2002.github.io_old
danielchang2002/FR-Perturb_DepMap
Factorize-Recover for Perturb-seq analysis (FR-Perturb)
danielchang2002/GI_transfer_learning
danielchang2002/GMHI-website-flask
danielchang2002/GMHI2-analysis
danielchang2002/GMHI2-old
danielchang2002/MAGIC
danielchang2002/MGS-canopy
danielchang2002/ML4H_final
danielchang2002/OpenMonkeyChallenge
Open Monkey Challenge Code
danielchang2002/prebiotics
danielchang2002/scGPT
danielchang2002/TCRP_GIN
Few shot learning for cancer
danielchang2002/VAECox_GIN
ISMB 2020: Improved survival analysis by learning shared genomic information from pan-cancer data