Pinned Repositories
Admixture
Step by step guide / scripts for running admixture analyses on SNP data
BIEN_Rarity
Repository for analyses that underlie global rarity manuscript
big_seed_plant_trees
comprehensive dated seed plants made with genbank and opentree
Bio723
Course repository for Bio 723
biodiverse
A tool for the spatial analysis of diversity
biodiverse_pipeline
Biodiverse pipeline for automating Biodiverse using R
brms
brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan
BUG-Resources
Collaborative resource for the SIO Bioinformatics Users Group (SIO-BUG)
Canarium-GBS
Deren and Sarah learning about Canarium
Comp-D_MPI
A program for comprehensive computation of D-statistics and population summaries using MPI
danielyao12's Repositories
danielyao12/Admixture
Step by step guide / scripts for running admixture analyses on SNP data
danielyao12/BIEN_Rarity
Repository for analyses that underlie global rarity manuscript
danielyao12/biodiverse
A tool for the spatial analysis of diversity
danielyao12/brms
brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan
danielyao12/Comp-D_MPI
A program for comprehensive computation of D-statistics and population summaries using MPI
danielyao12/data
danielyao12/DiscoSnp
DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.
danielyao12/easySFS
Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis
danielyao12/fineRADstructure
A package for population structure inference from RAD-seq data
danielyao12/Fu-s-test
danielyao12/GAP_hybpiper_helpers
Helper / wrapper scripts for running Hybpiper2 on NCI Gadi.
danielyao12/genomics_general
General tools for genomic analyses.
danielyao12/hybseq_target_enrichment_workflows
This repository contains instructions and scripts for running the Hybpiper package with orthology inference
danielyao12/learn_python3_spider
python爬虫教程系列、从0到1学习python爬虫，包括浏览器抓包，手机APP抓包，如 fiddler、mitmproxy，各种爬虫涉及的模块的使用，如：requests、beautifulSoup、selenium、appium、scrapy等，以及IP代理，验证码识别，Mysql，MongoDB数据库的python使用，多线程多进程爬虫的使用，css 爬虫加密逆向破解，JS爬虫逆向，分布式爬虫，爬虫项目实战实例等
danielyao12/lettuce2020
Codes for the lettuce resequencing project in 2020
danielyao12/pachyseris
Electronic notebook for "Morphological stasis masks ecologically divergent coral species on tropical reefs" (Current Biology, 2021)
danielyao12/phylotaR
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
danielyao12/popgen-notes
Population genetics notes
danielyao12/presentations
Presentations from the course
danielyao12/privacy-rarefaction
danielyao12/python-scraping
Code samples from the book Web Scraping with Python http://shop.oreilly.com/product/0636920034391.do
danielyao12/PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
danielyao12/Sanders-workflows
Common workflows used by the Sanders lab
danielyao12/scripts
Scripts for analysis used during the course
danielyao12/speciationgenomics.github.io
Repository for speciation genomics website
danielyao12/SRAssembler
Selective and Recursive local Assembler
danielyao12/stacks_workflow
RADseq workflow built around STACKS
danielyao12/statrethinking_winter2019
Statistical Rethinking course at MPI-EVA from Dec 2018 through Feb 2019
danielyao12/tutorials
机器学习相关教程
danielyao12/tutorials-1
Tutorials on phylogenetic and phylogenomic inference