danielyao12's Stars
dsilvestro/PyRate
PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.
mrborges23/delta_statistic
Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categorical trait and a phylogeny.
stromviklab/plastaumatic
Automated pipeline for assembly and annotation of plastid genomes
bpp/bpp
Bayesian analysis of genomic sequence data under the multispecies coalescent model
rancilhac/Introgression-tests-from-gene-trees
Script for detecting signals of introgression in large set of gene trees from unlinked markers
SchriderLab/drosophila_phylogeny
Pipeline overview and code (including BLT-DCT program) for widespread introgression across a phylogeny of 155 Drosophila genomes
Gene-Weaver/LeafMachine2
LeafMachine2 is a modular suite of computer vision and machine learning algorithms that enables efficient identification, location, and measurement of vegetative, reproductive, and archival components from digital plant datasets.
iamaayushrivastava/Leaf-Image-Classification-Using-Morphological-Features
Identification of plants by analyzing their leaves using digital image processing techniques which involves examining and extracting various morphological features such as shape, color, and texture. This approach influences technology to automate and streamline the identification process.
ritikahub/Leaf-Image-Classification
Identification of plants by analyzing their leaves using digital image processing techniques which involves examining and extracting various morphological features such as shape, color, and texture. This approach influences technology to automate and streamline the identification process.
muhammadwafi/Leaf-Morphology
Python code for extract leaf morphology based on image
mossmatters/phyloscripts
Helper scripts for processing and visualization of phylogenetics datasets
BenoitMorel/ParGenes
A massively parallel tool for model selection and tree inference on thousands of genes
evo-biomech/scAnt
open-source 3D scanning and processing pipeline
mikeroyal/Photogrammetry-Guide
Photogrammetry Guide. Photogrammetry is widely used for Aerial surveying, Agriculture, Architecture, 3D Games, Robotics, Archaeology, Construction, Emergency management, and Medical.
awesome-photogrammetry/awesome-photogrammetry
😎 Awesome photogrammetry projects
ruio-7/CQ-package
mscharmann/sexdelim
delimit sex-linked regions in chromosome-scale genome assemblies
hsigeman/findZX
edgardomortiz/Captus
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Bean061/putative_paralog
abdo3a/tutorials
Tutorials on phylogenetic and phylogenomic methods
JWDebler/orthofinder_extractor
Extract species specific orthogroups from Orthofinder results
pnatsi/OGFilter
A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria
MrTomRod/orthofinder-tools
Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to roary_plots
kdebray/RosaPhylogenomics
Custom scripts associated with Debray et al. (2020) in prep.
rafelafrance/traiter
Extract information from natural history annotations
rafelafrance/phylogenomic_dataset_construction
GregorySchwartz/diversity
Calculates the diversity of each position in a fasta file.
wxguillo/machuruku
Machuruku
mmatschiner/tutorials
Tutorials on phylogenetic and phylogenomic inference