This is a repo for Darach to track and host containers for doing bioinf/research.
- The main intention is to run as Singularity containers on linux systems, but they're written as Docker for compatibility (thanks Mohammed Kahlfan for the tip).
- There's a hope that this can get built and hosted on GitHub
Organzation copied from jlboat. (Of course, makes total sense to just use tags to organize things!)
Some recipes are for individual tools, some are for workflows and so are combos. Trying to figure out the ontology of this.
Todo:
- Docker containers for:
- seq qc
- munging and sed/awk-fu and shell
- starcode and requisite munging
- bartender I guess
- r
- jupyter
- python3
- lh3
- pacbio
- nanopore
- alignparse