darachm

Pinned Repositories

2018-10-32-test-uni
Language:Python0 1 00
AssemblyByPacBio
Scripts to assign a barcode to a variable region from PacBio SMRT reads
Language:Python0 0 00
BarNone
Match barcodes in sequencing data based on Levenshtein distance
Language:C++0 1 00
containers
Language:Makefile1 1 00
containers2
metarepo for tidying up container recipes, currently Singularity
Language:Makefile0 1 00
fitseq
Language:Python0 0 60
magnets_how_do_they_work
Language:HTML1 2 10
recombinator
Language:Python0 1 00
rhesis2
website
Language:CSS0 1 00
slapchop
Barcode/amplicon sequencing bioinformatics tool, chops up FASTQ reads into capture groups using fuzzy regular expressions instead of base-positions. Very flexible, very parallelized, order now !
Language:Python1 1 60

darachm's Repositories

darachm/containers
Language:Makefile1 1 00
darachm/slapchop
Barcode/amplicon sequencing bioinformatics tool, chops up FASTQ reads into capture groups using fuzzy regular expressions instead of base-positions. Very flexible, very parallelized, order now !
Language:Python1 1 60
darachm/containers2
metarepo for tidying up container recipes, currently Singularity
Language:Makefile0 1 00
darachm/fitseq
Language:Python0 0 60
darachm/bioinfmunger
An example GitHub Action (CI) to build a Singularity container
0 0
darachm/bookwyrm-doi
Social reading and reviewing, decentralized with ActivityPub
Language:Python0 0
darachm/dll-r
DLL2021 R workshop - info, slides, Rmd, notes
Language:HTML4 06
darachm/donor_gen
It makes donor plasmid cells from annotated gene fragments.
Language:Python
darachm/end-of-now
Language:HTML1 0
darachm/fake-headline
demo of misleading headline parsed
Language:HTML1 0
darachm/farbar
1 0
darachm/google-research
Google Research
Language:Jupyter Notebook0 0
darachm/guppy_parameter_optimiser
A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
darachm/itermae
Language:Python1 0
darachm/jitsi-demo
Language:HTML1 0
darachm/massive-wiki-starter
Massive Wiki starter repository
Language:CSS0 0
darachm/mermaid-live-editor
Edit, preview and share mermaid charts/diagrams.
Language:JavaScript0 0
darachm/scratch
1 0
darachm/shared
Language:Shell0 0
darachm/singularity_bartender
Bartender v1.1, stuck in a Singularity container for bioinformatics pipelines
Language:Roff1 0
darachm/singularity_ncbi-blast
1 0
darachm/singularity_ncbi-entrez
1 0
darachm/singularity_qc
Language:Roff0 0
darachm/sjhurling
Language:HTML1 0
darachm/stanford-hurling
Language:HTML1 0
darachm/starcode
All pairs search and sequence clustering
Language:C0 0
darachm/template-ghcr
Language:Dockerfile1 0
darachm/testpage
Language:HTML1 0
darachm/ubuntu-2004
1 0
darachm/workadventuretest
Language:Python0 0