Pinned Repositories
2018-10-32-test-uni
AssemblyByPacBio
Scripts to assign a barcode to a variable region from PacBio SMRT reads
BarNone
Match barcodes in sequencing data based on Levenshtein distance
containers
containers2
metarepo for tidying up container recipes, currently Singularity
fitseq
magnets_how_do_they_work
recombinator
rhesis2
website
slapchop
Barcode/amplicon sequencing bioinformatics tool, chops up FASTQ reads into capture groups using fuzzy regular expressions instead of base-positions. Very flexible, very parallelized, order now !
darachm's Repositories
darachm/magnets_how_do_they_work
darachm/recombinator
darachm/bartender-1.1
This bartender version could handle arbitrary length of barcode
darachm/bartender_munge
darachm/dki
This just slurps James DeKorne's iching website into scriptable presentation of the fun bits
darachm/docker-tuleap-aio
Build containers to run Tuleap
darachm/freebarcodes
FREE Divergence Error-Correcting DNA Barcodes
darachm/goenrich
GO enrichment with python -- pandas meets networkx
darachm/miso-bread-sample-repo
darachm/notebook
a script for yanking in yaml-formatted lab notebook entries, pushing the associated data files to hashed folders with links, making a yaml psuedo database flat file of everything, then querying into that notebook to make reports by tags for reading
darachm/preservethispodcast
This is the codebase for the Preserve This Podcast website and podcast RSS feed.
darachm/quant_magnetic_media
Data repository for "A Quantitative Approach to the Magnetic Media Crisis"
darachm/report-template
darachm/rhesis
darachm/rstudio
rstudio in singularity
darachm/safepy
Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
darachm/shell-slides
darachm/singularity-jupyter
Run jupyter notebook server in a singularity container
darachm/singularity_bioinf_munger
darachm/singularity_bwa
darachm/singularity_csvkit
darachm/singularity_dada2
darachm/singularity_grinder
darachm/singularity_jupyter
darachm/singularity_miniconda3
darachm/singularity_python3_for_darach
darachm/singularity_r_for_darach
Singularity container with R, tidyverse, and other packages
darachm/singularity_runningJobs
darachm/singularity_ubuntu
darachm/turbidostat