dariober/ASCIIGenome

GTF/GFF2/GFF3 nomenclature and identification

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dariober commented

There is a bit of confusion how ASCIIGenome recognises GTF/GFF2/GFF3 format extensions. This is how it should be:

  • GTF (extension .gtf) and GFF2 (ext .gff2) are the same format. So .gff2 should be processed as gtf.

  • GFF3 (ext .gff3) to be processed as gff.

  • Extension .gff should be processed as if gff3 (?? check me!)