dariober
Bioinformatician | I occasionally contribute to https://stats.stackexchange.com https://stackoverflow.com https://www.biostars.org
WCIP | University of GlasgowGlasgow, UK
Pinned Repositories
ASCIIGenome
Text Only Genome Viewer!
bioinformatics-cafe
Unsorted scripts for bioinformatics
cnv_facets
Somatic copy variant caller (CNV) for next generation sequencing
excelToCsv
Command-line exporter of MS Excel files to CSV format
fxstat
Fast and easy stats for FASTA and FASTQ files
genomeGraphs
Command line program to visualize genomic data
Illumina-450K-oxBS
Code accompanying the manuscript "Accurate measurement of 5-methylcytosine and 5-hydroxymethylcytosine in human cerebellum DNA by oxidative bisulfite on an array (OxBS-array)"
Java-cafe
A variety of bioinformatics programs written in Java
SICERpy
Python wrapper around the popular ChIP-Seq peak caller SICER
sympy-books
Maths textbook exercises implemented in SymPy
dariober's Repositories
dariober/ASCIIGenome
Text Only Genome Viewer!
dariober/cnv_facets
Somatic copy variant caller (CNV) for next generation sequencing
dariober/bioinformatics-cafe
Unsorted scripts for bioinformatics
dariober/SICERpy
Python wrapper around the popular ChIP-Seq peak caller SICER
dariober/sympy-books
Maths textbook exercises implemented in SymPy
dariober/fxstat
Fast and easy stats for FASTA and FASTQ files
dariober/excelToCsv
Command-line exporter of MS Excel files to CSV format
dariober/quadratic-programming-deconvolution
A tutorial on quadratic programming for deconvolution of mixed cell populations using R
dariober/test-setup-travis
Sandbox to experiment set up scripts with Travis CI
dariober/Apollo3-testci
Fork for experimenting with github workflows
dariober/bioconda-recipes
Conda recipes for the bioconda channel.
dariober/bioconda-utils
Utilities for building and managing bioconda recipes
dariober/cancer-variants-pipeline
Pipeline for somatic variant detection from NGS data
dariober/companion
A genome annotation tool for more than just protists
dariober/DNAscent
Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
dariober/epic2
Ultraperformant reimplementation of SICER
dariober/Fix-OneDrive-Zip
Fix OneDrive Zip files >4Gig
dariober/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
dariober/htsjdk-1.141
Fork of htsjdk version 1.141. Mostly for the purpose of adapting it to other projects.
dariober/htsjdk-test
dariober/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
dariober/Jawk
Java AWK interpreter/compiler
dariober/rnaseq-downsample-effect
Effect of downsampling the number of reads on differential gene expression from RNAseq experiments
dariober/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
dariober/snakemake-mcl-cluster
Snakemake pipeline for Markov clustering
dariober/super-simple-stock
The super simple stock exercise from JPMorgan
dariober/TCGAbarcode
dariober/test-appveyor
Repository for testing integration with AppVeyor
dariober/test-chipseq
Example of a pipeline for processing ChIPseq data
dariober/test-ena-query
Python interface to query the European Nucleotide Archive (ENA)