Issues
- 4
Issue after installing with conda
#61 opened by danielt86 - 1
Using other reference genome builds
#62 opened by mhSepehri - 4
Warning message: region "1" specifies an unknown reference name. Continue anyway.
#60 opened by thebrownlife - 6
issue installing cnv_facets using conda
#55 opened by dalalsult - 4
- 12
Fonts missing? Incorrect plotting of png file.
#38 opened by tstokowy - 2
- 4
Pooled multiple controls bam files together ?
#20 opened by npatel22526 - 1
- 1
Which vcf file should be used?
#58 opened by h170607 - 1
- 2
question about ploidy estimate
#54 opened by guillaume-rs - 3
R dependency issue
#33 opened by vymao - 2
difference between LOH and DUP-LOH
#53 opened by guillaume-rs - 1
Tabular output from `cnv_facets`
#51 opened by Faizal-Eeman - 2
--min-read-counts hardcoded to 0,0 instead of 25,0 as recommended by FACETS manual
#50 opened by bozbezbozzel - 0
- 1
- 1
purity=NA
#47 opened by stroke1989 - 5
have no records
#45 opened by stroke1989 - 4
error in evaluating the argument 'con' in selecting a method for function 'isOpen': TabixFile: file(s) do not exist:
#46 opened by asmlgkj - 7
Issue with facets execution
#44 opened by nsoriano2 - 0
Annotate facets output
#43 opened by tstokowy - 7
Cluster execution halted error with "parallel" in R 4.1.0 version on RHEL8 machine.
#42 opened by shivak3 - 1
chromosome name
#41 opened by sotaro-kanematsu - 2
Clarification concerning CF_EM info tag
#17 opened by PubuduSaneth - 0
- 1
conda install not working
#39 opened by lydiayliu - 2
Issues with install dependencies
#37 opened by umasaxena - 3
Segmentation values for targeted panels?
#34 opened by vymao - 1
Clarification on segment start value
#36 opened by vymao - 1
- 1
vcf file
#32 opened by sotaro-kanematsu - 1
Update facets v0.5.14 to v0.6.1
#31 opened by ckandoth - 12
mkfifo: cannot create fifo...
#25 opened by mizunokei - 1
conda cnv_Facets does nbot work
#30 opened by worker000000 - 0
The start position of the ouput vcf
#29 opened by YingYa - 0
Can I force the ploidy to a specific value (experimentally validated) in facets?
#28 opened by Francesc-Muyas - 0
log-odds-ratio threshold for LOH
#27 opened by ahwanpandey - 1
Cannot allocate memory error
#26 opened by alhafidzhamdan - 0
CRAM format support?
#24 opened by YingYa - 6
- 1
--snp-vcf option
#23 opened by viancheng - 1
- 1
LCN_EM=. ?
#21 opened by wclee47 - 2
- 4
libcrypto.so.1.0.0 error in cnv_facets.
#14 opened by wangxlab - 1
Germline CNV calling?
#16 opened by xysj1989 - 1
Running cnv_facets for tumor samples that don't have normal counterpart samples
#15 opened by LeiG1103 - 1
Run SNP-pileup only [Feature Request]
#13 opened by not-rs