dariober/ASCIIGenome

Issues

• | Header | Header |

  #103 opened 2 years ago by duct-billed-placer
  0

• [Timeliness&Querying]

  #102 opened 2 years ago by duct-billed-placer
  1

• Can ASCIIGenome filter reads having indels on a specific genomic region?

  #100 opened 2 years ago by YingziZhang-github
  3

• Cannot add .gz; skipping

  #97 opened 3 years ago by u2058152
  1

• demo for batch plot

  #96 opened 5 years ago by xiucz
  0

• setConfig should not set invalid key

  #95 opened 5 years ago by dariober
  0

• goto command should accept space separated args

  #93 opened 5 years ago by dariober
  0

• `find` should accept a list of tracks

  #94 opened 5 years ago by dariober
  0

• Increase number of displayed reads from BAM

  #91 opened 5 years ago by deanbobo
  2

• Is there a way to scroll up and down to view all reads in ASCIIgenome?

  #92 opened 5 years ago by zhengxinchang
  2

• f and r with invalid argument semi-silently ignores the error

  #90 opened 6 years ago by dariober
  1

• Fail if file not found

  #88 opened 6 years ago by dariober
  1

• Cannot create sqlite database: [SQLITE_IOERR_LOCK] I/O error in the advisory file locking logic (disk I/O error)

  #87 opened 6 years ago by dariober
  1

• Corrupted TabixIndex

  #38 opened 6 years ago by dariober
  2

• Initialize from SAM file with missing chromosome

  #86 opened 6 years ago by dariober
  1

• Track height set to 0 on start

  #85 opened 6 years ago by dariober
  0

• Cannot run ASCIIGenome on windows

  #83 opened 6 years ago by sunnysean
  14

• error opening bam file

  #84 opened 6 years ago by jahann
  1

• Even after upgrading from java 7 to java 8 , I still get the following error

  #82 opened 7 years ago by santhiya85
  2

• Unsupported major.minor version 51.0 on Ubuntu 14.04

  #58 opened 8 years ago by avilella
  3

• awk function with `featureDisplayMode`

  #80 opened 7 years ago by dariober
  1

• Info on failing to add track

  #73 opened 7 years ago by dariober
  2

• `print` with `-full` and `-sys` does not print full line

  #78 opened 7 years ago by dariober
  0

• Color features by regex

  #76 opened 7 years ago by dariober
  1

• gffNameAttr on gtf file does not set attribute name

  #74 opened 7 years ago by marbeno
  5

• Add help for getSamTag

  #72 opened 7 years ago by dariober
  1

• Long help for INT

  #70 opened 7 years ago by dariober
  1

• Reads with long skipped regions are processed very slowly

  #67 opened 8 years ago by dariober
  1

• Unindexed and headerless VCF is not loaded

  #65 opened 8 years ago by dariober
  1

• Enable changing of background color

  #56 opened 8 years ago by mptrsen
  11

• Extension .bgz is not recognized

  #62 opened 8 years ago by dariober
  1

• Example BS-colouring

  #57 opened 8 years ago by avilella
  1

• multiple tracks from list of http bigwig (bw) urls

  #60 opened 8 years ago by avilella
  1

• Create pdf screenshots GConf warning

  #61 opened 8 years ago by avilella
  1

• multiple commands on non-interactive

  #59 opened 8 years ago by avilella
  1

• Set genome from unindexed fasta

  #55 opened 8 years ago by dariober
  1

• vcf file not showing as track.

  #52 opened 8 years ago by etheleon
  3

• Autocompletion on sequence names

  #53 opened 8 years ago by mptrsen
  1

• Reading tabix from ftp

  #51 opened 8 years ago by dariober
  0

• Remote tabix index is not used

  #41 opened 8 years ago by dariober
  1

• Next ignores features starting at start of chrom

  #50 opened 8 years ago by dariober
  1

• awk incompatible with next and find

  #49 opened 8 years ago by dariober
  1

• VCF with `print`: color leaks into the printed line

  #48 opened 8 years ago by dariober
  1

• Load plain wig format

  #47 opened 8 years ago by dariober
  0

• GTF/GFF2/GFF3 nomenclature and identification

  #46 opened 8 years ago by dariober
  0

• `extend` should understand k and m suffixes

  #45 opened 8 years ago by dariober
  0

• Adding bams from different genomes

  #43 opened 8 years ago by dariober
  1

• hideTitle keeps blank line

  #42 opened 8 years ago by dariober
  1

• Print features puts omitted in the wrong place

  #44 opened 8 years ago by dariober
  1

• addTrack doesn't set genome

  #40 opened 8 years ago by dariober
  1