databio/GenomicDistributions

Issues

• getTssFromGTF

  #209 opened 8 months ago by Shukla04
  3

• Error installing GenomicDistributionsData

  #208 opened a year ago by nsheff
  3

• Custom partitions for a custom reference

  #206 opened 2 years ago by rrashford
  3

• Trying to use calcChromBinsRef for a custom genome fails

  #205 opened 2 years ago by aminakur
  5

• Missing reference data

  #111 opened 4 years ago by jpsmith5
  18

• Determining which regions were labeled with each partition name

  #201 opened 2 years ago by rrashford
  1

• make an option to plot different datasets by different colors

  #180 opened 3 years ago by kkupkova
  3

• Support for organisms such as Plasmodium Falciparum with gffs/gtfs that dont have 'gene_biotype' in the 9th column

  #190 opened 2 years ago by JesseRop
  5

• mm10 genome not available in GenomicDistributions or ExperimentHub

  #196 opened 2 years ago by rrashford
  3

• Genomic partitions plot frequencies not per set

  #189 opened 3 years ago by ChristelKrueger
  2

• Build reference data examples require too large of downloads.

  #175 opened 3 years ago by nsheff
  2

• in plotQTHist, numbers param doesn't always work

  #179 opened 3 years ago by nsheff
  4

• plotQTHist quantile param name

  #178 opened 3 years ago by nsheff
  0

• Deprecation warning

  #176 opened 3 years ago by nsheff
  2

• Assignment operator

  #174 opened 3 years ago by nsheff
  1

• Confusion about branches

  #177 opened 3 years ago by nsheff
  1

• Add enhancers to partition plots

  #139 opened 3 years ago by kkupkova
  1

• Distance to TSSs is wrong

  #173 opened 3 years ago by nsheff
  5

• Expected tissue specificity plots

  #153 opened 4 years ago by kkupkova
  6

• Reduce memory use

  #140 opened 4 years ago by xuebingjie1990
  2

• Reduce run time

  #141 opened 3 years ago by xuebingjie1990
  7

• increase GC content calculation performance

  #142 opened 3 years ago by stolarczyk
  6

• Dinucleotide frequency

  #133 opened 3 years ago by kkupkova
  0

• Proportional feature overlap

  #132 opened 3 years ago by kkupkova
  0

• GenomicDistributions not compatible with R >=4.0?

  #145 opened 4 years ago by steph-e
  2

• Add feature overlap bar plot

  #137 opened 4 years ago by kkupkova
  0

• Chromosome distribution plot not sorted correctly when 2 regions sets are not in all chromosomes

  #125 opened 4 years ago by kkupkova
  0

• Rainfall plots

  #124 opened 4 years ago by nsheff
  0

• Violin plots for cell type

  #131 opened 4 years ago by kkupkova
  0

• Bioconductor submission status

  #114 opened 4 years ago by joseverdezoto
  5

• ranking distance to tss plots

  #123 opened 4 years ago by nsheff
  0

• Help with Sorting using nbins

  #129 opened 4 years ago by ser9gj
  3

• update install instructions

  #122 opened 4 years ago by nsheff
  1

• Clean up repository history

  #121 opened 4 years ago by nsheff
  2

• Vignettes needs to update

  #117 opened 4 years ago by xuebingjie1990
  20

• plotOpenSignal suggestions

  #113 opened 4 years ago by nsheff
  4

• openSignalMatrix maximum is 0.6279

  #107 opened 4 years ago by nsheff
  4

• Is there GenomicDistributions compatibility with R 3.6?

  #116 opened 4 years ago by hugokitano
  5

• Partition priority: UTR priorities too low

  #104 opened 4 years ago by nsheff
  3

• Showcase example set

  #89 opened 4 years ago by nsheff
  2

• WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versio

  #103 opened 4 years ago by nsheff
  2

• .requireAndReturn function missing

  #105 opened 4 years ago by nsheff
  1

• warning in cumulative partitions distribution calculation

  #100 opened 4 years ago by joseverdezoto
  4

• Rbuild ignore data-raw?

  #94 opened 4 years ago by nsheff
  1

• BiocCheck missing fixes

  #110 opened 4 years ago by joseverdezoto
  19

• specificity plot labels are unreadable

  #112 opened 4 years ago by nsheff
  1

• could not find function "dtToGR"

  #106 opened 4 years ago by nsheff
  6

• Gene models for partition plots not building properly

  #92 opened 4 years ago by kkupkova
  13

• feature distance and partition plot defaults

  #93 opened 4 years ago by nsheff
  0

• percentage partition plots questions

  #90 opened 4 years ago by nsheff
  1