datajoint/workflow-miniscope
Example DataJoint workflow for miniscope calcium imaging analysis with CaImAn
Jupyter NotebookMIT
Issues
- 0
Fix segmentations and deconvolved traces for example data in `05-explore` notebook
#25 opened by kabilar - 1
Test in DataJoint cloud environment
#7 opened by kabilar - 2
- 0
Docker compose revise volume mapping
#26 opened by CBroz1 - 0
Add `04-automate` Jupyter notebook
#19 opened by kabilar - 1
Add integration tests for `analysis.py`
#24 opened by CBroz1 - 2
Release Example Datasets
#5 opened by kabilar - 0
Create integration tests with pytest
#8 opened by kabilar - 0
Update `05-explore` Jupyter notebook
#20 opened by kabilar - 1
Create `GitHub Actions` for integration tests
#10 opened by kabilar - 0
Miniscope Alpha Release
#4 opened by kabilar - 0
Miniscope Beta Release
#6 opened by kabilar - 1
Tutorial in video format
#15 opened by kabilar - 1
Add example dataset for MiniscopeAnalysis package
#13 opened by kabilar - 1
- 0
Create docker-compose file for integration tests
#11 opened by kabilar