DataJoint
Open-source ecosystem for the science lab that support computational data pipelines built with the DataJoint open-source framework (Python, MATLAB).
Pinned Repositories
datajoint-labbook
DataJoint LabBook is a graphical user interface built using React to facilitate working with DataJoint computational pipelines.
datajoint-matlab
Relational data pipelines for the science lab
datajoint-python
Relational data pipelines for the science lab
datajoint-tutorials
Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
element-array-ephys
DataJoint Element for Neuropixels analysis with Kilosort
element-calcium-imaging
DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT
element-deeplabcut
DataJoint Element for behavioral analysis with DeepLabCut
mysql-docker
Docker image for MySQL configured to work with DataJoint
workflow-array-ephys
Example DataJoint workflow for Neuropixels analysis with Kilosort
workflow-calcium-imaging
Example DataJoint workflow for multi-photon calcium imaging analysis with CaImAn and Suite2p
DataJoint's Repositories
datajoint/datajoint-python
Relational data pipelines for the science lab
datajoint/element-deeplabcut
DataJoint Element for behavioral analysis with DeepLabCut
datajoint/datajoint-tutorials
Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
datajoint/element-calcium-imaging
DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT
datajoint/mym
MySQL API for MATLAB with support for BLOB objects
datajoint/datajoint-docs
Landing Page for DataJoint Documentation
datajoint/element-array-ephys
DataJoint Element for Neuropixels analysis with Kilosort
datajoint/element-facemap
DataJoint Element for behavioral analysis with Facemap
datajoint/element-interface
Common functions for the DataJoint Elements
datajoint/element-moseq
DataJoint Element for Motion Sequencing with Keypoint-MoSeq
datajoint/pharus
Pharus is a generic REST API server backend for DataJoint pipelines built on top of flask, datajoint, and pyjwt.
datajoint/compress-multiphoton
Compression for multiphoton calcium imaging movies and stacks
datajoint/djlabhub-docker
A docker image optimized for deploying to JupyterHub a JupyterLab environment with DataJoint Python.
datajoint/element-miniscope
DataJoint Element for miniscope calcium imaging analysis with CaImAn
datajoint/element-session
DataJoint Element for session management
datajoint/sciops-summit-2024
DataJoint SciOps Summit - Schedule
datajoint/djlab-docker
A docker image optimized for running a JupyterLab environment with DataJoint Python.
datajoint/.github
Organizational default configs for @datajoint repos
datajoint/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
datajoint/datajoint-file-validator
A framework for validating DataJoint files and filesets
datajoint/element-electrode-localization
DataJoint Element for localizing Neuropixels electrodes
datajoint/element-event
DataJoint Element for event-based behavior experiments
datajoint/element-optogenetics
DataJoint Element for optogenetic experiments
datajoint/element-zstack
DataJoint Element for volumetric data analysis using Cellpose
datajoint/manual-letsencrypt
datajoint/nginx-docker
datajoint/poisson-numcodecs
Numcodecs implementation of photon conversion using poisson statistics
datajoint/sciops-summit-2024-datajoint-101
Course materials for the DataJoint 101 track -- DataJoint SciOps Summit 2024
datajoint/suite2p
cell detection in calcium imaging recordings
datajoint/workflow-deeplabcut
Example DataJoint workflow for behavioral analysis with DeepLabCut