datajoint/element-array-ephys

Issues

• Update tests to also run on Python 3.9-3.12 like `datajoint/datajoint-python`

  #207 opened a year ago by tabedzki
  0

• `ProbeType.create_neuropixels_probe` warning message improvements

  #206 opened a year ago by tabedzki
  0

• Tutorial notebook renders incorrectly in dark mode

  #147 opened 2 years ago by kushalbakshi
  1

• Compatibility with SpikeGLX 20230202-phase30 or later

  #168 opened 2 years ago by ttngu207
  0

• FileNotFoundError in demo_prepare.ipynb

  #154 opened 2 years ago by vncntprvst
  1

• NWB-export.ipynb error

  #163 opened 3 years ago by JaerongA
  0

• Cannot find query.csv

  #162 opened 3 years ago by JaerongA
  0

• Current `pipeline.py` logic launches error if `ephys_mode` not `no_curation`

  #161 opened 3 years ago by CBroz1
  0

• Add 3D probe trajectory plots to `08-electrode-localization.ipynb`

  #160 opened 3 years ago by kabilar
  0

• Add additional NWB export pytests

  #159 opened 3 years ago by kabilar
  1

• Add NWB export pytest to verify LFP data is the same for both export functions

  #158 opened 4 years ago by kabilar
  0

• Simply pytests `subjects_csv` and `sessions_csv` by removing pandas dependency

  #157 opened 4 years ago by CBroz1
  1

• Cannot parse filename for probe insertion number for SpikeGLX Phase 3A probes

  #156 opened 4 years ago by kabilar
  0

• Create light dataset that can be used as demo with `workflow-array-ephys`

  #155 opened 4 years ago by kabilar
  2

• Trigger CatGT

  #45 opened 2 years ago by kabilar
  1

• Consider adding support for SpikeInterface

  #42 opened 2 years ago by kabilar
  1

• Trigger Kilosort in a resumable fashion

  #40 opened 3 years ago by kabilar
  1

• Trigger Kilosort2.5

  #34 opened 3 years ago by kabilar
  1

• Add x,y,z coordinates to NWB export function `add_electrodes_to_nwb`

  #57 opened 4 years ago by kabilar
  0

• Add NWB export for `ephys_acute` (acute probe insertion) module

  #38 opened 4 years ago by kabilar
  2

• Add support for external store of `LFP` and `WaveformSet` data

  #32 opened 3 years ago by kabilar
  1

• Add NWB export for `ephys_chronic` (probe insertion) module

  #55 opened 3 years ago by kabilar
  1

• Trigger pyKilosort

  #39 opened 3 years ago by kabilar
  1

• Consider splitting NWB export to raw and processed exported files

  #80 opened 3 years ago by CBroz1
  0

• Update Kilosort triggering to look for data that is pre-processed with CatGT

  #76 opened 3 years ago by kabilar
  0

• Save LFP data for Neuropixels 2.0

  #74 opened 3 years ago by kabilar
  0

• Add support for Open Ephys to NWB LFP export from source function

  #60 opened 4 years ago by kabilar
  0

• Add assertions to ensure relevant functions in `linking_module`

  #56 opened 4 years ago by CBroz1
  0

• start time of lfp data

  #51 opened 4 years ago by bendichter
  3

• Consider adding electrode group for spike sorting

  #43 opened 4 years ago by CBroz1
  0

• Trigger TPrime

  #46 opened 4 years ago by kabilar
  0

• matnwb cannot read output NWB file

  #81 opened 3 years ago by CBroz1
  6

• Add NotImplementedError when loading LFP data for Neuropixels 2.0

  #75 opened 3 years ago by kabilar
  0

• Add documentation for `ephys_mode`

  #59 opened 4 years ago by CBroz1
  0

• git requirements prevent PyPI publishing

  #108 opened 3 years ago by CBroz1
  4

• `fileTimeSecs` missing from SpikeGLX meta file for a few datasets

  #37 opened 4 years ago by kabilar
  0

• `element_interface` not in requirements

  #66 opened 3 years ago by sneakers-the-rat
  2

• Documentation missing export requirements

  #85 opened 3 years ago by CBroz1
  0

• nwb dependency update

  #123 opened 3 years ago by CBroz1
  0

• Add quality control metrics

  #33 opened 3 years ago by kabilar
  1

• blackify - pending closure of outstanding PRs

  #68 opened 3 years ago by CBroz1
  1

• Expand `SkullReference` mention in `README`

  #50 opened 3 years ago by CBroz1
  2

• Move `readers` to `element-interface`

  #31 opened 3 years ago by kabilar
  1

• Add `NotImplementedError` when using NWB export function with `ephys_acute` or `ephys_chronic` modules

  #63 opened 3 years ago by kabilar
  0

• Version lock NWB export requirements

  #61 opened 3 years ago by kabilar
  0

• Add support for trial-based experiments

  #47 opened 3 years ago by kabilar
  1

• Update PyPI release

  #67 opened 3 years ago by sneakers-the-rat
  2

• Review, merge, and delete `chronic-probe-insertion` branch

  #52 opened 3 years ago by kabilar
  2

• converting spikeGLX LFP data to NWB

  #48 opened 3 years ago by bendichter
  3

• Permit multiple root directories for `ephys_chronic` and `ephys_no_curation`

  #49 opened 4 years ago by CBroz1
  0