datajoint/workflow-calcium-imaging
Example DataJoint workflow for multi-photon calcium imaging analysis with CaImAn and Suite2p
Jupyter NotebookMIT
Issues
- 1
- 1
Add pytests for `imaging_preprocess` module
#75 opened by kabilar - 1
Add pytest for `imaging_no_curation` module
#67 opened by kabilar - 1
`djarchive` pointer in integration tests
#65 opened by CBroz1 - 1
- 1
- 4
Implement `FISSA` within a notebook
#68 opened by kabilar - 1
Add example dataset for CaImAn analysis package
#26 opened by kabilar - 1
- 8
- 1
- 1
Add example dataset for Suite2p analysis package
#25 opened by kabilar - 1
- 2
- 1
- 0
Equipment table does not import properly
#77 opened by kushalbakshi - 1
- 1
Create `GitHub Actions` for pytests
#35 opened by kabilar - 1
Add video tutorial link to README
#44 opened by kabilar - 0
Update with `black` code formatting
#71 opened by kabilar - 3
Add pytest for suite2p trigger
#49 opened by tdincer - 0
integration test failure in `test_ingest.py`
#54 opened by tdincer - 0
- 1
- 2
Readme refers to a non-existing notebook
#47 opened by tdincer - 1
- 0
Add support for MiniscopeAnalysis package
#29 opened by kabilar - 0
- 1
Create Docker environment for integration tests
#34 opened by kabilar