DataJoint

Open-source tools for computational data pipelines.

United States of America

Pinned Repositories

datajoint-labbook
DataJoint LabBook is a graphical user interface built using React to facilitate working with DataJoint computational pipelines.
Language:TypeScript11 5 9814
datajoint-matlab
Relational data pipelines for the science lab
Language:MATLAB42 26 16939
datajoint-python
Relational data pipelines for the science lab
Language:Python175 18 62386
datajoint-tutorials
Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
Language:Jupyter Notebook10 12 4134
element-array-ephys
DataJoint Element for Neuropixels analysis with Kilosort
Language:Python5 12 5335
element-calcium-imaging
DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT
Language:Jupyter Notebook9 13 4344
element-deeplabcut
DataJoint Element for behavioral analysis with DeepLabCut
Language:Jupyter Notebook13 11 3039
mysql-docker
Docker image for MySQL configured to work with DataJoint
Language:Shell18 8 1718
workflow-array-ephys
Example DataJoint workflow for Neuropixels analysis with Kilosort
Language:Jupyter Notebook9 10 2523
workflow-calcium-imaging
Example DataJoint workflow for multi-photon calcium imaging analysis with CaImAn and Suite2p
Language:Jupyter Notebook8 14 2927

DataJoint's Repositories

datajoint/datajoint-matlab
Relational data pipelines for the science lab
Language:MATLAB42 26 16939
datajoint/datajoint-labbook
DataJoint LabBook is a graphical user interface built using React to facilitate working with DataJoint computational pipelines.
Language:TypeScript11 5 9814
datajoint/workflow-array-ephys
Example DataJoint workflow for Neuropixels analysis with Kilosort
Language:Jupyter Notebook9 10 2523
datajoint/workflow-calcium-imaging
Example DataJoint workflow for multi-photon calcium imaging analysis with CaImAn and Suite2p
Language:Jupyter Notebook8 14 2927
datajoint/sci-viz
Generic visualization framework for building dashboarding capabilities for DataJoint pipelines.
Language:TypeScript6 6 6312
datajoint/datajoint-elements
DataJoint Elements is a collection of curated computational workflows for neurophysiology experiments.
Language:Shell3 12 6212
datajoint/microns_phase3_nda
nda schema for MICrONS phase3
Language:Jupyter Notebook3 2 022
datajoint/datajoint-docs-original
Language:Python2 9 17213
datajoint/workflow-miniscope
Example DataJoint workflow for miniscope calcium imaging analysis with CaImAn
Language:Jupyter Notebook2 11 169
datajoint/element-animal
DataJoint Element for animal management
Language:Python1 10 718
datajoint/element-lab
DataJoint Element for lab management
Language:Python1 10 916
datajoint/element-session
DataJoint Element for session management
Language:Python1 10 718
datajoint/point-cloud-registration
Point Cloud Registration
Language:Jupyter Notebook1 8 06
datajoint/workflow-optogenetics
Example DataJoint workflow for optogenetics research
Language:Jupyter Notebook1 7 04
datajoint/ccn2023
Language:Jupyter Notebook2
datajoint/datajoint-file-validator
A framework for validating DataJoint files and filesets
Language:Python1 01
datajoint/datajoint.org
Primary site for the DataJoint open-source framework.
Language:HTML8
datajoint/ecephys_spike_sorting
Modules for processing extracellular electrophysiology data from Neuropixels probes
Language:Python1 06
datajoint/element-electrode-localization
DataJoint Element for localizing Neuropixels electrodes
Language:Jupyter Notebook8 99
datajoint/element-optogenetics
DataJoint Element for optogenetic experiments
Language:Jupyter Notebook10 48
datajoint/element-visual-stimulus
DataJoint Element for generating visual stimuli
Language:MATLAB8 56
datajoint/intanrhdreader
Python reader for .rhd data files
Language:Python2
datajoint/intanrhsreader
Python reader for .rhs data files
Language:Python3
datajoint/pyopenephys
Python reader for open ephys
Language:Python1 01
datajoint/sbxreader
Reader for Neurolabware scanbox files
Language:Python1 02
datajoint/sci-viz-demo
A demonstration of SciViz's latest features included as part of the pipeline visualization framework.
Language:Jupyter Notebook11 09
datajoint/sciops-workshop
DataJoint SciOps Workshop
5 03
datajoint/workflow-deeplabcut
Example DataJoint workflow for behavioral analysis with DeepLabCut
Language:Jupyter Notebook8 59
datajoint/workflow-session
Example DataJoint workflow for lab, subject and session management
Language:Jupyter Notebook11 106
datajoint/workflow-zstack
Example DataJoint workflow for volumetric data analysis using BossDB
Language:Jupyter Notebook8 13