dauparas/LigandMPNN

Issues

• Ligand Recognition

  #32 opened 2 months ago by pikaha2410
  5

• If redesigned_residues_multi is supplied, the list of residues to redesign in not correct

  #9 opened 6 months ago by oteri
  4

• Design a new sequence and pack side chains with RFNA Output

  #34 opened a month ago by Leo-T-Zang
  1

• Problem with Ligand

  #23 opened 4 months ago by jmProteins2024
  5

• Timeout for wget model parameters

  #22 opened 4 months ago by merttopcu-rhea
  4

• definition of per-residue label for membranempnn

  #33 opened 2 months ago by ShuhaoGithub
  0

• Making training files

  #31 opened 3 months ago by lcesaire3
  0

• Alternate protonation states cause sequence truncation

  #30 opened 3 months ago by faraguna-ginkgo
  0

• Multiple sequence design for one target

  #26 opened 3 months ago by lzygitk7
  2

• Definition of different types of residues in membraneMPNN

  #29 opened 3 months ago by ShuhaoGithub
  0

• Please, output 'probs' and 'log_probs'

  #28 opened 3 months ago by agarrubio
  0

• No ligand atoms parsed

  #27 opened 3 months ago by agarrubio
  1

• index 0 is out of bounds for dimension 1 with size 0

  #18 opened 5 months ago by sherryliu987
  2

• Segmentation fault when winning on MAC oc

  #19 opened 4 months ago by Vepricov
  1

• Can I run LigandMPNN on my Windows Laptop?

  #20 opened 4 months ago by emilyrkang
  2

• 2 design a new sequence and pack side chains (return 4 side chain packing samples)

  #24 opened 4 months ago by amelie-iska
  1

• Typo in README.md file and argparser help text for example of fixing/redesigning/parsing specific chains

  #25 opened 4 months ago by amelie-iska
  1

• tree module in python can't be installed

  #17 opened 4 months ago by Rojo14
  5

• TypeError: can't multiply sequence by non-int of type 'Forward'

  #11 opened 4 months ago by al979
  3

• Add a requirements.txt file

  #13 opened 4 months ago by TheLostLambda
  1

• Full-atom output PDB

  #1 opened 7 months ago by BJHardy
  4

• Designing HOMO-OLIGOMER error

  #10 opened 6 months ago by Lyang556
  1

• If fixed_residues_multi is supplied, the list of detectef fixed residues is wrong

  #8 opened 6 months ago by oteri
  0

• Typo in overall_confidence definition in README.md

  #7 opened 6 months ago by hippolytej
  0

• LigandMPNN dataset

  #3 opened 7 months ago by bio-rat
  1

• Training code

  #5 opened 7 months ago by niklaskristiansen
  2

• Output an npz file with 20 mutation probabilities

  #2 opened 7 months ago by PKU-Leroy
  5

• Fixed Residues Not Working for Multiple Chains

  #6 opened 7 months ago by amelie-iska
  2

• Docked Ligands Being Excluded Due To 0 Occupancy Value

  #4 opened 7 months ago by CharlieJohnson98
  3