Pinned Repositories
aitac
awesome-public-datasets
A topic-centric list of high-quality open datasets in public domains. By everyone, for everyone!
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
bdds-piq
bdds-piq
btools
A series of scripts to automate the execution of commands within a cluster.
cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
CNVWorkflow_Code
CNV analysis workflow code for the manuscript
dauss75.github.io
DeltaMSI
DeltaMSI: AI-based screening for microsatellite instability in solid tumors
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
dauss75's Repositories
dauss75/aitac
dauss75/CNVWorkflow_Code
CNV analysis workflow code for the manuscript
dauss75/dauss75.github.io
dauss75/DeltaMSI
DeltaMSI: AI-based screening for microsatellite instability in solid tumors
dauss75/downsampling
Downsample fastq files in an automated way
dauss75/downsampling-FASTQ
FASTQ downsampling using seqtk
dauss75/fastahack
utilities for indexing and sequence extraction from FASTA files
dauss75/fastq-multx
Demultiplexes a fastq.
dauss75/fusioncatcher
Finder of Somatic Fusion Genes in RNA-seq data
dauss75/gene-outlier-detection
A Bayesian model for identifying gene expression outliers for individual single samples (N-of-1) when compared to a cohort of background datasets.
dauss75/GWA_tutorial
A comprehensive tutorial about GWAS and PRS
dauss75/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
dauss75/intersect-VCF-and-bed
dauss75/jvarkit
Java utilities for Bioinformatics
dauss75/mimsi
Microsatellite Instability Classification using Multiple Instance Learning
dauss75/MSIFinder
MSI detect
dauss75/msisensor-pro
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
dauss75/neo-germline-filtering
dauss75/ngsutils
Tools for next-generation sequencing analysis
dauss75/pTrimmer
Used to trim off the primer sequence from mutiplex amplicon sequencing
dauss75/PureCN
Copy number calling and variant classification using targeted short read sequencing
dauss75/PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
dauss75/SGZ
dauss75/SRSLYumi
Process unique molecule identifiers (UMI) for SRSLY DNA NGS libraries
dauss75/strelka
Strelka2 germline and somatic small variant caller
dauss75/TMB
Tumor Mutational Burden
dauss75/vcf_stuff
đź“ŠEvaluating, filtering, comparing, and visualising VCF
dauss75/vcfstats
Powerful statistics for VCF files
dauss75/VisualMSI
Detect and visualize microsatellite instability(MSI) from NGS data
dauss75/wes_srslyumi