Pinned Repositories
jointforces
A Python package to conduct 3D Traction Force Microscopy on multicellular aggregates (spheroids).
arnold
Python package to analyze cell forces using 3D Traction Force Microscopy assuming simple geometries
CompactionAnalyzer
Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.
jointforces-outdated
A Python package to conduct 3D Traction Force Microscopy on multicellular aggregates (spheroids).
openpiv-python
OpenPIV is an open source Particle Image Velocimetry analysis software written in Python and Cython
clickpoints
Click Points is a program written in the Python programming language, which serves on the one hand as an image viewer and on the other hand as an data display and annotation tool. Every frame can be annotated by a description, marked points/tracks, or marked areas (paint brush). This helps to view image data, do manual evaluation of data, help to create semi-automatic evaluation or display the results of automatic image evaluation.
fiber-orientation
Evaluates fiber orientation
pyTFM
2 dimensional particle image velocimetry, traction force microscopy and monolayer stress microscopy
openpiv-python
OpenPIV is an open source Particle Image Velocimetry analysis software written in Python and Cython
saenopy
Semi-affine Elastic Network Optimizer to calculate forces in collagen or other biopolymer networks.
davidbhr's Repositories
davidbhr/CompactionAnalyzer
Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.
davidbhr/arnold
Python package to analyze cell forces using 3D Traction Force Microscopy assuming simple geometries
davidbhr/jointforces-outdated
A Python package to conduct 3D Traction Force Microscopy on multicellular aggregates (spheroids).
davidbhr/openpiv-python
OpenPIV is an open source Particle Image Velocimetry analysis software written in Python and Cython