Biophysics Group at the University of Erlangen-Nuremberg
The Erlangen biophysics group studies the fundamental mechanical properties of cells, tissues, and complex soft matter.
Erlangen, Germany
Pinned Repositories
2Camera_Qt
3D_piv_example_data
A simple data set for 3D Particel Image Veolcimetry
clickpoints
Click Points is a program written in the Python programming language, which serves on the one hand as an image viewer and on the other hand as an data display and annotation tool. Every frame can be annotated by a description, marked points/tracks, or marked areas (paint brush). This helps to view image data, do manual evaluation of data, help to create semi-automatic evaluation or display the results of automatic image evaluation.
Deformation_Cytometer
a low cost easy to use deformation cytometer
fiber-orientation
Evaluates fiber orientation
pyTFM
2 dimensional particle image velocimetry, traction force microscopy and monolayer stress microscopy
shear_flow_deformation_cytometer
spheroid-tracking
spheroid_invasion_assay
Invasiveness of 3D spheroids using the radial cell density profile.
YoloViewer
Biophysics Group at the University of Erlangen-Nuremberg's Repositories
fabrylab/pyTFM
2 dimensional particle image velocimetry, traction force microscopy and monolayer stress microscopy
fabrylab/clickpoints
Click Points is a program written in the Python programming language, which serves on the one hand as an image viewer and on the other hand as an data display and annotation tool. Every frame can be annotated by a description, marked points/tracks, or marked areas (paint brush). This helps to view image data, do manual evaluation of data, help to create semi-automatic evaluation or display the results of automatic image evaluation.
fabrylab/shear_flow_deformation_cytometer
fabrylab/3D_piv_example_data
A simple data set for 3D Particel Image Veolcimetry
fabrylab/Deformation_Cytometer
a low cost easy to use deformation cytometer
fabrylab/fiber-orientation
Evaluates fiber orientation
fabrylab/spheroid_invasion_assay
Invasiveness of 3D spheroids using the radial cell density profile.
fabrylab/2Camera_Qt
fabrylab/Classic-Invasion-Assay
Analysis of cingle cell invasion depth of cells beeing seeded of top of a (collagen-)gel. Cells need to be imaged with BF and Fluo (Hoechst).
fabrylab/clickpointsexamples
Some example datasets for ClickPoints
fabrylab/localAlignement
A clickpoints addon to analyze the alignement of vector fields close to manually drawn lines
fabrylab/pengu_track
Master thesis Alexander Winterl, tracking algorithms for penguins and cells.
fabrylab/SegmenationEvaluation
clickpoints addon to compare two segmentation algorithms
fabrylab/spheroid-tracking
fabrylab/YoloViewer
fabrylab/Bioprinter
scripts to use the bioprinter
fabrylab/example_data_for_pyTFM
example data for pyTFM
fabrylab/tracking_andreas
collection of tracking scripts by Andreas