davidjakubosky's Stars
Future-House/paper-qa
High accuracy RAG for answering questions from scientific documents with citations
ossu/bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
freeseek/score
Tools to work with GWAS-VCF summary statistics files
ENCODE-DCC/long-read-rna-pipeline
ENCODE long read RNA-seq pipeline
pjgreer/ukb-rap-tools
Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
lukfor/pgs-calc
Applying polygenic scores (PGS) on imputed genotypes
BSEL-UC3M/pMoSS
pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-validation. Exploits the dependence on the sample size to characterize the differences among groups of large datasets
browning-lab/ukb-phasing
A pipeline for phasing UK Biobank whole genome sequence data
guilliottslab/scripts_GuilliamsEtAll_Cell2022
TorkamaniLab/Genotype_Imputation_Pipeline
Final version of the pipeline for processing TOPMED and other dbGaP datasets, includes: automatic identification of reference genome build and selection of correct chain file, mapping to GRCh37 reference build, initial quality control, ancestry analysis, post-ancestry quality control, phasing, imputation, post-imputation quality control.
srubinacci/imputation-ukb-ref-panel
Genotype imputation pipelines for the UK Biobank Research Analysis Platform
jvtalwar/GRIEVOUS
GRIEVOUS: Generalized Realignment of Innocuous and Essential Variants Otherwise Utilized as Skewed
ChongWuLab/aMAT
A computationally efficient and powerful method multi-trait association analysis (tailored for a large number of traits)
selfdecode/snps
tools for reading, writing, merging, and remapping SNPs
frazer-lab/i2QTL-eQTL-analysis
Oliver-111/m3vcf