davidmasp

davidmasp's Stars

• OpenInterpreter/open-interpreter

  A natural language interface for computers

  Language:Python50.6k4.4k

• mrvollger/rustybam

  bioinformatics toolkit in rust

  Language:Rust752

• ratatui-org/ratatui

  Rust library that's all about cooking up terminal user interfaces (TUIs) 👨‍🍳🐀

  Language:Rust8.8k263

• ente-io/ente

  Fully open source, End to End Encrypted alternative to Google Photos and Apple Photos

  Language:Dart11.2k625

• HigherOrderCO/Bend

  A massively parallel, high-level programming language

  Language:Rust16.7k410

• zaeleus/noodles

  Bioinformatics I/O libraries in Rust

  Language:Rust46353

• JunyueC/sci-RNA-seq3_pipeline

  Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)

  Language:Python3715

• lh3/bedtk

  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

  Language:C13215

• dcjones/coitrees

  A very fast interval tree data structure

  Language:Rust1047

• vsbuffalo/granges

  A Rust library and command line tool for working with genomic ranges and their data.

  Language:Rust905

• davidmasp/data-visualization

  This is a repository to host data visualizations

  Language:R6

• coreylowman/cudarc

  Safe rust wrapper around CUDA toolkit

  Language:Rust48565

• swar/nba_api

  An API Client package to access the APIs for NBA.com

  Language:Python2.3k515

• snakemake-workflows/dna-seq-gatk-variant-calling

  This Snakemake pipeline implements the GATK best-practices workflow

  Language:Python233141

• ollama/ollama

  Get up and running with Llama 3, Mistral, Gemma 2, and other large language models.

  Language:Go76.4k5.7k

• etiennebacher/tidypolars

  Get the power of polars with the syntax of the tidyverse

  Language:R1413

• seqeralabs/wave

  On-demand containers provisioning service

  Language:Groovy273

• mediacms-io/mediacms

  MediaCMS is a modern, fully featured open source video and media CMS, written in Python/Django and React, featuring a REST API.

  Language:JavaScript2.5k457

• google/deepsomatic

  DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.

  9612

• JoseEspinosa/nf-test

  Simple test framework for Nextflow pipelines

  2

• bedops/bedops

  :microscope: BEDOPS: high-performance genomic feature operations

  Language:C29159

• arq5x/bedtools2

  bedtools - the swiss army knife for genome arithmetic

  Language:C915285

• lh3/cgranges

  A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

  Language:C16218

• vsbuffalo/scidataflow

  Command line scientific data management tool

  Language:Rust1887

• pachterlab/gget

  🧬 gget enables efficient querying of genomic reference databases

  Language:Python88469

• pachterlab/ffq

  A tool to find sequencing data and metadata from public databases.

  Language:Python53346

• rpetit3/fastq-dl

  Download FASTQ files from SRA or ENA repositories.

  Language:Python26824

• samtools/hts-specs

  Specifications of SAM/BAM and related high-throughput sequencing file formats

  Language:TeX632175

• advplyr/audiobookshelf

  Self-hosted audiobook and podcast server

  Language:JavaScript5.7k394

• ManimCommunity/manim

  A community-maintained Python framework for creating mathematical animations.

  Language:Python19.9k1.5k