davidmeijer
(bio|chem)informatics PhD candidate
Wageningen University, The NetherlandsWageningen, The Netherlands
Pinned Repositories
clamshell_plot
Create a clamshell plot for your counts data.
davidmeijer
Config files for my GitHub profile.
davidmeijer.github.io
My personal website.
mol2html
Small wrapper around 3dmol.js and html2canvas for creating self-contained HTML files that display a 3D molecular representation.
molray
Ray tracer for creating simple molecule depictions.
pikachu
Python-based Informatics Kit for Analysing Chemical Units
som-tsp
Self-organising maps for finding a sub-optimal solution for the traveling salesman problem.
versalign
Multiple sequence aligner for arbitrary objects.
CineMol
Direct-to-SVG small molecule drawer.
MolTools
Toolbelt landing page.
davidmeijer's Repositories
davidmeijer/versalign
Multiple sequence aligner for arbitrary objects.
davidmeijer/mol2html
Small wrapper around 3dmol.js and html2canvas for creating self-contained HTML files that display a 3D molecular representation.
davidmeijer/molray
Ray tracer for creating simple molecule depictions.
davidmeijer/pikachu
Python-based Informatics Kit for Analysing Chemical Units
davidmeijer/clamshell_plot
Create a clamshell plot for your counts data.
davidmeijer/davidmeijer
Config files for my GitHub profile.
davidmeijer/davidmeijer.github.io
My personal website.
davidmeijer/gptchem
davidmeijer/grape-release
GRAPE official release repo
davidmeijer/metaflux
Web application for metabolic flux modelling.
davidmeijer/minimal-docker-template
davidmeijer/portfolio
Personal website source code.
davidmeijer/pyvista-molecule
PyVista wrapper for drawing high resolution (GIFs of) 3D molecular conformers.
davidmeijer/rl_playground
davidmeijer/RLContinuousActionSpace
Reinforcement Learning in continuous state and action spaces. DDPG: Deep Deterministic Policy Gradient and A3C: Asynchronous Actor-Critic Agents
davidmeijer/scaffold-extraction
Create molecular scaffold embeddings from molecule clusters.
davidmeijer/som-tsp
Self-organising maps for finding a sub-optimal solution for the traveling salesman problem.
davidmeijer/test_data
davidmeijer/thesis_regioselectivity
davidmeijer/python-intermediate-inflammation
A template software project for use in Intermediate Research Software Development Skills In Python course. Contact: @jag1g13
davidmeijer/BioChroma
davidmeijer/ML_UVvisModels
davidmeijer/sgpy
Python package for creating and interacting with graph databases of protein domains and their genome coordinates
davidmeijer/statmech