davidmeijer

davidmeijer's Stars

• Cinnamon/kotaemon

  An open-source RAG-based tool for chatting with your documents.

  Language:Python21.4k1133841.7k

• dabeaz-course/python-mastery

  Advanced Python Mastery (course by @dabeaz)

  Language:Python10.9k86361.8k

• bayesian-optimization/BayesianOptimization

  A Python implementation of global optimization with gaussian processes.

  Language:Python8.1k1303721.6k

• luispedro/mahotas

  Computer Vision in Python

  Language:Python8594992150

• reymond-group/smilesDrawer

  A small, highly performant JavaScript component for parsing and drawing SMILES strings. Released under the MIT license.

  Language:JavaScript4641214573

• dijonmusters/build-a-saas-with-next-js-supabase-and-stripe

  Language:JavaScript2974867

• Kohulan/DECIMER-Image_Transformer

  DECIMER Image Transformer is a deep-learning-based tool designed for automated recognition of chemical structure images. Leveraging transformer architectures, the model converts chemical images into SMILES strings, enabling the digitization of chemical data from scanned documents, literature, and patents.

  Language:Python23775859

• peastman/statmech

  Language:Jupyter Notebook1256333

• samgoldman97/ms-pred

  Predicting tandem mass spectra from molecules

  Language:Jupyter Notebook8781016

• amir-cardiolab/PINN-wss

  PINN for obtaining WSS from sparse data

  Language:Python626621

• pluskal-lab/MassSpecGym

  MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)

  Language:Jupyter Notebook501166

• DeepRank/deeprank2

  An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.

  Language:Python44834010

• cthoyt/autoreviewer

  👁️‍🗨️ Scientists often do the same bad stuff. Automate giving feedback during peer review.

  Language:Python28280

• biosustain/Maud

  Enzyme models that take into account kinetics, allostery and thermodynamics

  Language:Python2761882

• dgreenheck/isometric-rpg

  Language:JavaScript2710

• coleygroup/rdcanon

  SMARTS sanitization

  Language:Jupyter Notebook25224

• YuanyueLi/MSEntropy

  Spectral entropy for mass spectrometry data.

  Language:Python24207

• PNNL-CompBio/ML_UVvisModels

  Language:Jupyter Notebook12511

• lotusnprod/lotus-search

  https://search.nprod.net/

  Language:Python93470

• florisvdf/ai-environmental-impact

  Mini workshop to provide a peak of what’s happening under the hood of models currently at the frontier of the AI revolution, and about how we can track the emissions of our own code.

  6100

• carpentries-incubator/python-intermediate-inflammation

  A template software project for use in Intermediate Research Software Development Skills In Python course. Contact: @anenadic

  Language:Python5113236

• genenotebook/react-bio-viz

  React components for biological data visualization

  Language:TypeScript4221

• holmrenser/introduction_to_react

  Code, assignments and slides for a 50minute introduction to building web apps with react.

  Language:TeX4101

• socialgene/sgpy

  Python package for creating and interacting with graph databases of protein domains and their genome coordinates

  Language:Python41110

• mmzdouc/modern_python

  Template to set up a modern Python project

  Language:Python3102

• nlouwen/submission-prototype

  Language:Python3101

• rxn4chemistry/OChemR

  From a chemical reaction image, detect and classify molecules, text and arrows by using the Vision Transformer DETR. Comparisons with well-established CNNs (RetinaNet and FasterRCNN also provided). The detections are then translated into text "OCR" or into SMILES. The direction of the reaction is learned and preserved into the output files.

  Language:Jupyter Notebook3002

• daz10000/ILDemo

  Playground for testing dotnet IL evaluation

  Language:F#2100

• holmrenser/blastserver

  Language:TypeScript2100

• esciencecenter-digital-skills/2024-04-15-ds-intermediate-python

  Language:HTML110