dawei1203/JWAS.jl

Julia for Whole-genome Analysis Software

JWAS.jl

JWAS.jl is an open-source software tool written in Julia for Bayesian multiple regression methods applied to genome-wide association studies and genomic prediction.

• Homepage: QTL.rocks
• Discussion group: available here
• Installation: at the Julia REPL, using Pkg; Pkg.add("JWAS")
• Documentation: available here
• Notebooks: available here
• Authors: Hao Cheng, Rohan Fernando, Dorian Garrick

Structure of JWAS Module

JWAS.jl

├────── build_model
├────── set_covariate
├────── set_random
├────── get_pedigree
├────── add_genotypes
├────── outputMCMCsamples
├────── showMME
├────── solve
└────── runMCMC

├──────── PedModule.jl

├──────── Datasets.jl

Help

1. Show this README file in REPL or notebook using ?JWAS
2. For help on a specific function above, type ? followed by its name, e.g. ?runMCMC and press enter.
3. Run Pkg.add(PackageSpec(name="JWAS", rev="master")) to get the newest unofficial JWAS. Run Pkg.free("JWAS") to go back to the offical one.