dawei1203

Pinned Repositories

amfinder
The AMFinder suite contains Python scripts that enable high-throughput annotation of mycorrhizal structures from pictures of ink-stained plant roots, as well as a fully-featured browser for manual curation and heatmap generation.
Language:OCaml00
ballgown
Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
Language:R00
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Language:C00
Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
Language:PostScript00
bio_code
this project is content about my bioinformation analysis code .it may have R，Shell，Python.
Language:C00
BioinfoContainers
Various Singularity recipes I've used to generate containers
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Camoco
Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
Language:Python0 0 00
CandiHap
A haplotype analysis toolkit for natural variation study.
Language:Perl00
centos
0 1 00
ChronoRoot
Language:Python0 0 00

dawei1203's Repositories

dawei1203/amfinder
The AMFinder suite contains Python scripts that enable high-throughput annotation of mycorrhizal structures from pictures of ink-stained plant roots, as well as a fully-featured browser for manual curation and heatmap generation.
Language:OCaml00
dawei1203/bio_code
this project is content about my bioinformation analysis code .it may have R，Shell，Python.
Language:C00
dawei1203/Camoco
Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
Language:Python0 0 00
dawei1203/centos
0 1 00
dawei1203/ChronoRoot
Language:Python0 0 00
dawei1203/ChronoRootControl
Web interface controling ChronoRoot image acquisition module
dawei1203/Co-expression-analysis-using-Camoco
Co-expression analysis using Camoco
dawei1203/GEMMA
Genome-wide Efficient Mixed Model Association
dawei1203/GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
dawei1203/GWAS_Flow
GPU accelerated GWAS framework based on TensorFlow
dawei1203/JWAS.jl
Julia for Whole-genome Analysis Software
dawei1203/kILBIL
Custom code used in the manuscript:
dawei1203/LCV
Software implementing the Latent Causal Variable Model
dawei1203/LDBlockShow
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
dawei1203/leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
Language:R0 0
dawei1203/lettuce2020
Codes for the lettuce resequencing project in 2020
dawei1203/MaizeSNPDB
A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines
dawei1203/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Language:C0 0
dawei1203/MPGV
dawei1203/msfs_teo
mSFS using a teosinte natural population
dawei1203/nf-gwas-pipeline
A Nextflow Genome-Wide Association Study (GWAS) Pipeline
dawei1203/NGS-analysis
二代测序数据分析
dawei1203/PAST
Pathway Association Study Tool (PAST)
Language:R0 0
dawei1203/rmats-turbo
dawei1203/RNA-Seq-Model-Organism-Arabidopsis-thaliana
RNA Seq Model Organism Arabidopsis thaliana using paired end reads
dawei1203/TF_CollaborativeNet
dawei1203/Transcriptome
The expression data on DAP15 maize kernel of the 368 association panel, quantified based on RNA-seq.
dawei1203/TwoSampleMR
R package for performing 2-sample MR using MR-Base database
dawei1203/vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
dawei1203/xpclr
Code to compute the XP-CLR statistic to infer natural selection