Pinned Repositories
amfinder
The AMFinder suite contains Python scripts that enable high-throughput annotation of mycorrhizal structures from pictures of ink-stained plant roots, as well as a fully-featured browser for manual curation and heatmap generation.
ballgown
Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
bio_code
this project is content about my bioinformation analysis code .it may have R,Shell,Python.
BioinfoContainers
Various Singularity recipes I've used to generate containers
Camoco
Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
CandiHap
A haplotype analysis toolkit for natural variation study.
centos
ChronoRoot
dawei1203's Repositories
dawei1203/TBtools
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
dawei1203/genomics_general
General tools for genomic analyses.
dawei1203/vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
dawei1203/TransDecoder
TransDecoder source
dawei1203/mQTL_code
Multiple-QTL mapping and candidate gene ranking
dawei1203/Population_Genetics_in_R
A primer for computational tools to analyze genetics of populations in R
dawei1203/my-R
a small collection for my R scripts
dawei1203/fastqtl
Enhanced version of the FastQTL QTL mapper
dawei1203/fastStructure
A variational framework for inferring population structure from SNP genotype data.
dawei1203/ggbiplot
A biplot based on ggplot2
dawei1203/PopLDdecay
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
dawei1203/NGS-pipeline
By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
dawei1203/DIRT
Digital Imaging of Root Traits
dawei1203/Reseqtools
A Toolkit for analyzing next-generation DNA Re-Sequencing data
dawei1203/GWA_tutorial
A comprehensive tutorial about GWAS and PRS
dawei1203/GenSel
Anything related to GenSel program from Iowa State
dawei1203/qqman
An R package for creating Q-Q and manhattan plots from GWAS results
dawei1203/ea-utils
Automatically exported from code.google.com/p/ea-utils
dawei1203/gecs
dawei1203/ballgown
Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
dawei1203/linkage_map
map_map
dawei1203/xpehh
code for computing xp-ehh