Pinned Repositories
fast-scBatch-paper-script
ISSAAC-seq
pig_and_human_EPSC
plate_scATAC-seq
A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
scATAC_snakemake
Snakemake pipeline for plate scATAC-seq processing
scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
SUSTech-BIO210
Course material for the undergraduate biostatistics course (BIO210) at SUSTech
SUSTech-BIOS201
Course content for BIOS201 at SUSTech
dbrg77's Repositories
dbrg77/scATAC_snakemake
Snakemake pipeline for plate scATAC-seq processing
dbrg77/SUSTech-BIO210
Course material for the undergraduate biostatistics course (BIO210) at SUSTech
dbrg77/SUSTech-BIOS201
Course content for BIOS201 at SUSTech
dbrg77/fast-scBatch-paper-script
dbrg77/LLMs-from-scratch
Implementing a ChatGPT-like LLM from scratch, step by step
dbrg77/LR-splitpipe
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
dbrg77/quarto_hugo_demo
dbrg77/TikZ_and_PGFPlots_draw
dbrg77/AIGS
dbrg77/awesome-long-reads
tools and notes for long reads analysis
dbrg77/BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
dbrg77/Blacklist
Application for making ENCODE Blacklists
dbrg77/cellhint
A tool for semi-automatic cell type harmonization and integration
dbrg77/Compound-SNE
dbrg77/datavisguide
Introductory guide to the art and science of data visualisation. Insights, advice, and examples (with code) to make data outputs more readable, accessible, and impactful.
dbrg77/fatecompass
dbrg77/Hierarchical_reject
dbrg77/landchad
Landchad.net Website Tutorial Page
dbrg77/NSForest
A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing
dbrg77/numpy-ml
Machine learning, in numpy
dbrg77/picasso
Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
dbrg77/Python
All Algorithms implemented in Python
dbrg77/python-genomics
A set of files to do genomics analysis on python
dbrg77/RMEJLBASBMP_2024
Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"
dbrg77/Sceptic
dbrg77/seqspec
machine-readable file format for genomic library sequence and structure
dbrg77/ShiArthur03
dbrg77/singleCellHaystack-py
A Python implementation of singleCellHaystack
dbrg77/STACAS
Sub-Type Anchoring Correction for Alignment in Seurat
dbrg77/topometry
Systematically learn and evaluate manifolds from high-dimensional data