dcgerard/updog

Issues

• How to Deal With The VCF File of AD

  #33 opened 4 months ago
  0

• export_vcf function is not working

  #28 opened 10 months ago
  2

• Specifying separate priors for each SNP in multidog

  #27 opened a year ago
  2

• Remove ggplot2 dependency.

  #26 opened 10 months ago
  0

• Missing data for tetraploid multiparenting population

  #25 opened 2 years ago
  3

• ERROR: "non-finite value supplied by optim"

  #24 opened 2 years ago
  3

• Have updog return phred-scaled genotype likelihoods

  #23 opened 2 years ago
  3

• State which SNP provides warnings

  #22 opened 2 years ago
  0

• Missing Parental Data

  #21 opened 2 years ago
  0

• `multidog()` does not work with odd ploidy species when `model = "f1"`

  #20 opened 3 years ago
  2

• Sequencing Error Rate Estimation in F1 Populations

  #19 opened 10 months ago
  6

• Is mupdog available for half-sib families?

  #18 opened 3 years ago
  1

• Error with parallel processing with multidog

  #16 opened 4 years ago
  4

• Error in foreach loop of multidog - can't find "flexdog_full" function

  #15 opened 4 years ago
  3

• How to get the VCF file

  #14 opened 4 years ago
  5

• Question about Model selection

  #13 opened 4 years ago
  2

• Improvement of multidog

  #12 opened 4 years ago
  2

• Add Vignette on Importing VCF Data

  #11 opened 5 years ago
  1

• Provide in-house Filtering Functions

  #10 opened 5 years ago
  1

• Use drop = FALSE in color scale for plot.updog()

  #9 opened 5 years ago
  1

• Add option to return either NA or the modal prior genotype for 0 read individuals

  #8 opened 5 years ago
  1

• Remove tidyverse from Suggests

  #7 opened 5 years ago
  0

• Multi-SNP input for flexdog()

  #6 opened 5 years ago
  0

• Change DBL_EPSILON to DOUBLE_EPS throughout

  #4 opened 5 years ago
  1

• Create snpname argument.

  #3 opened 6 years ago
  0

• Option `model = "f1ppdr"` is very unstable.

  #2 opened 6 years ago
  1

• Not constraining s1pp to have same levels of preferential pairing.

  #1 opened 6 years ago
  1