Bioconvert
Bioconvert is a project to facilitate the interconversion of life science data from one format to another.
| note: | Bioconvert is tested with Travis for the following Python version: 3.5 and 3.6. Python 2 won't be provided. |
|---|---|
| contributions: | Want to add a convertor ? Please join bioconvert#1 |
| issues: | Please use https://github.com/biokit/bioconvert/issues |
Installation
In order to install bioconvert, you can use pip:
pip install bioconvert
We also provide releases on bioconda (http://bioconda.github.io/):
conda install bioconvert
and Singularity container are available. See http://bioconvert.readthedocs.io/en/master/user_guide.html#installation for details.
Usage
bioconvert input.fastq output.fasta bioconvert input.fq output.fasta bioconvert input.mybam output.bed --input-format bam bioconvert --formats bioconvert --help
Available Converters
