deepmodeling/dpdata
Manipulating multiple atomic simulation data formats, including DeePMD-kit, VASP, LAMMPS, ABACUS, etc.
PythonLGPL-3.0
Issues
- 0
[Feature Request]
#642 opened by ZLI-afk - 2
[BUG] convesion from cp2k output to deepMD format
#673 opened by link796 - 0
[BUG] system cannot be appended to multi-systems if it has been dumped in mixed type format
#670 opened by wanghan-iapcm - 3
[BUG] The LabeledSystem would raise error when the abacus log file does not contain force
#662 opened by floatingCatty - 1
- 6
[BUG] LabeledSystem from OUTCAR not working
#359 opened by hoba87 - 4
slow to import dpdata
#526 opened by link89 - 3
[BUG] Wrong cell shape when convert structure between `vasp/poscar` and `lammps/lmp`
#651 opened by ZLI-afk - 2
- 0
[BUG] Unable to handle incomplete trajectories
#616 opened by nbzy1995 - 0
[BUG] could not convert string to float
#611 opened by TongaoY - 2
- 1
[Feature Request] ASE's traj format
#610 opened by thangckt - 1
- 1
Using the DP model to predict the energy of each frame structure in the LAMMPS trajectory
#609 opened by XuFanffei - 7
[BUG] dpdata extracts incorrect box information when extracting NPT_F dynamics trajectories calculated by cp2k (version 7.1)
#589 opened by xiaohe-njust - 0
- 2
[BUG] list index out of range when converting ABACUS MD output files to data.gro
#588 opened by iid-ccme - 6
dp data cannot translate OUTCAR results in machine learning AIMD(MLAIMD)
#586 opened by Suyoung999999999 - 0
- 12
Error with converting CP2K AIMD_output
#378 opened by yunjian-hash - 1
When using dpdata to convert the CP2K output file into an MD executable file, it can be converted when the MD in CP2K-inp is 1, but when the MD is converted to 100, the following error occurs:AssertionError
#544 opened by XuFanffei - 0
- 3
[BUG] virials issue in vasprun.xml
#536 opened by HsuQuinn - 2
[BUG]When I use a script to convert OUTCAR to npy format, I encounter the following error:
#348 opened by BraunSakai - 0
[BUG] the coords can't be identified when read_from gaussian log file
#512 opened by Zhang-Zhiyuan-zzy - 0
Change values of dpdata.LabeledSystem() and multi frames for ‘abacus/scf’
#455 opened by AroundPeking - 1
[BUG] Reading data error for ABACUS 3.2
#449 opened by scott-5 - 2
- 4
[BUG] OUTCAR transformation
#347 opened by mukui123 - 12
the result is empty when dpdata complete the task of converting the data of cp2k to the data of deepmd
#556 opened by 12jscvb - 4
[BUG] dpdata support cp2k v2023.1
#508 opened by PolyuWeldingSpock - 8
After installing cp2kdata, the trajectory with an MD of 100 Although the trajectory can be read But throw an error:dpdata.system.DataError: Shape of coords is (51, 130, 3), but expected (5001, 130, 3
#543 opened by XuFanffei - 10
an error processing AIMD data for CP2K
#462 opened by caojiachun - 2
- 0
cp2k 2023 changes its output format
#507 opened by singlebook - 15
[BUG]when cutting a dataset of cp2k/aimd, the command of data.sub_system made such a bug.
#439 opened by jiaweiGe472 - 1
- 1
- 1
[BUG] fail merging three dataset from cp2k/aimd using the command of append.
#438 opened by jiaweiGe472 - 2
- 3
ibrav > 1 not supported yet.
#408 opened by francescomambretti - 1
- 2
An error
#435 opened by Taixi-Feng - 1
When I use a script to convert aimd_siesta to deepmd format. I encounter the following error:
#441 opened by marciosampaio - 4
Code format
#344 opened by zezhong-zhang - 4
[BUG]Dpdata-Gaussian Error
#404 opened by wuxxuu - 0
New feature request for perturbation process
#393 opened by LiangWenshuo1118 - 0
- 1