deflaux

GoogleSeattle

Pinned Repositories

ukb-cross-analysis-demo-project
Workbench demo project: cross-analysis of AoU and UKB.
Language:Jupyter Notebook11 6 03
workbench-snippets
Code snippets for use in All of Us Workbench notebooks.
Language:Jupyter Notebook15 10 156
cellprofiler-on-Terra
Run CellProfiler on Terra. Contains workflows that enable a full end-to-end Cell Painting pipeline.
Language:WDL7 4 224
ml4h
Language:Python124 24 12623
scalable_analytics
Public collaboration of Scalable Single Cell Analytics
Language:Python12 11 15
bigquery-examples
Example BigQuery integrations. Includes both sql and R wrappers.
Language:Python1 3 10
cloudml-examples
Examples of using CloudML with genomic data.
Language:Python1 2 00
linkage-disequilibrium
A suite of Java tools to calculate linkage disequilibrium between variants and load the results into BigQuery and BigTable.
Language:Jupyter Notebook1 2 00
spark-distributed-louvain-modularity
Spark / graphX implementation of the distributed louvain modularity algorithm
Language:Scala1 2 00
variant-qc
Quality control methods for human genomic variants.
Language:Jupyter Notebook62 29 1029

deflaux's Repositories

deflaux/cloudml-examples
Examples of using CloudML with genomic data.
Language:Python1 2 00
deflaux/variant-qc
Codelabs demonstrating usage of several tools and systems on genomic data.
Language:Jupyter Notebook1 2 01
deflaux/analysis-py-utils
Python utilities for BigQuery analyses.
Language:Python0 2 00
deflaux/ml4h
Language:Python0 1 00
deflaux/site-selection-tool
Metis implements simulation tools for clinical trial enrollment.
Language:Jupyter Notebook0 1 00
deflaux/workbench-snippets
Code snippets for use in All of Us Workbench notebooks.
Language:Python0 2 30
deflaux/bigrquery
An interface to Google's BigQuery from R.
Language:R1 0
deflaux/CatterPlot
Did you ever wish you could make scatter plots with cat shaped points? Now you can!
Language:R2 0
deflaux/catterplotpy
A tool for creating catterplots in Python with matplotlib
Language:Python
deflaux/cellprofiler-on-Terra
Run CellProfiler on Terra
Language:wdl0 0
deflaux/datasets
Images and other data from the JUMP Cell Painting Consortium
Language:Jupyter Notebook0 0
deflaux/embedder
Computing per-cell embeddings for all jump-cp data.
Language:Python
deflaux/examples-Python
Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
Language:Jupyter Notebook2 0
deflaux/examples-R
Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.
Language:R2 0
deflaux/gatk-tools-java
Tools for using Picard and GATK with the Google Genomics API.
Language:Java2 0
deflaux/genomewarp
Language:Java2 0
deflaux/hail
Scalable genomic data analysis.
Language:Python0 0
deflaux/horsefish
Language:Python1 0
deflaux/leonardo
Notebook service
Language:Scala1 0
deflaux/Nurses
Language:R2 0
deflaux/pipelines-api-examples
Examples for the Google Genomics Pipelines API.
Language:Python2 0
deflaux/Ronaldo
R package for Leonardo users
deflaux/start-here
Documentation for all of the googlegenomics repositories.
3 01
deflaux/terra-axon-examples
Example notebooks and documentation for working with the Terra Axon UI.
Language:WDL0 0
deflaux/terra-docker
Language:Python1 0
deflaux/terra-examples
Example notebooks for use in data analysis
Language:Jupyter Notebook1
deflaux/terra-ui
Workbench app
Language:JavaScript1 0
deflaux/terra-workspace-manager
Language:Java0 0
deflaux/ukb-cross-analysis-demo-project
Workbench demo project: cross-analysis of AoU and UKB.
Language:Jupyter Notebook0 0
deflaux/workbench
All of Us Researcher Workbench
Language:Java2 0