Output location and output format

[zcsheng95]

Hi,
Is it feasible to use delly sansa to specify the output location and format?
I was getting the output bcf file at the current directory and ideally, I would like to get a tab-delimited table to examine fusion candidates like the one in the README.md.
The command I used is below:
$sansa annotate -i Name -g ./genome/Homo_sapiens.GRCh38.102.chr.gff3.gz ./tags/${stem}.vcf

Thanks,
Jeff

[tobiasrausch]

sansa annotate lists the available options. -o specifies the output location. For instance:

sansa annotate -i Name -g ./genome/Homo_sapiens.GRCh38.102.chr.gff3.gz -o /tmp/out.tsv.gz delly.bcf

zcat /tmp/out.tsv.gz | head

[zcsheng95]

Thanks a lot, I was not aware it is a gzipped file.