gene-annotation
There are 43 repositories under gene-annotation topic.
dzhang32/ggtranscript
Visualizing transcript structure and annotation using ggplot2
j-andrews7/Genotify
A minimal desktop app for easy and convenient gene annotation and lookup.
sestaton/HMMER2GO
Annotate DNA sequences for Gene Ontology terms
tlatkowski/deep-learning-gene-expression
Deep learning methods for feature selection in gene expression autism data.
arendsee/phylostratr
An R framework for phylostratigraphy
dellytools/sansa
Structural variant VCF annotation, duplicate removal and comparison
nf-core/genomeannotator
Pipeline for the identification of (coding) gene structures in draft genomes.
alejandrogzi/gxf2bed
fastest GTF/GFF-to-BED converter chilling around
decodebiology/geneSCF_inactive
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
alejandrogzi/bed2gtf
high-performance BED-to-GTF converter written in Rust
alejandrogzi/bed2gff
cool BED-to-GFF3 converter that runs in parallel
mtisza1/DNA_methylase_finder
Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
bpucker/yam
scripts associated with yam genome assembly
cmbi/metadome
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
sagnikbanerjee15/fungal_genome_assemblies_and_annotation
Analysis workflow to generate fungal assemblies, generate gene structural and functional annotations
alejandrogzi/postoga
The post-TOGA processing pipeline
lihaone/GeneBridge
Integrative systems analysis identifying the associations between genes and biological process or modules.
tderond/CO-ED
Co-occurrence of enzyme domains
alejandrogzi/noel
GTF/GFF per gene non-overlapping exon length calculator
dzhang32/ER_paper_2020_supp_code
Supplementary code for the paper: Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders
grassking100/deep_gene_annotator
The related code of the master thesis, "Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thaliana"
KatrionaGoldmann/omicAnnotations
Package to gather gene information, annotations, and functions
lehwark/GBSON
A new annotation file format based on JSON, containing all information stored in the GenBank format but with advantageoius parsing and information structure properties.
pentalpha/rna_gatherer_2020
ncRNA identification, annotation and functional prediction
dzhang32/ODER
Optimising the Definitions of Expressed Regions
joonan-lab/gene-mat-recipe
This is a recipe to make my gene matrix
kkwock/Stone
Stone Lab @ CSUEB Collaboration Projects focused on Plant Bioinformatics
MoseleyBioinformaticsLab/categoryCompare2
Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.
sanger-tol/ensemblgenedownload
Nextflow DSL2 pipeline to download gene annotations from Ensembl.
ahabegger/Gene-Annotation-Comparison
A bioinformatics software system designed for comparing gene annotations between different releases for a selected species. It includes Python classes for data processing, information extraction, a MySQL relational database, and web-based interfaces for dynamic data querying.
mkayasth/viralGeneClock
Linux tool for relative mutation rate of different genes across viral strains.
mkayasth/viralGeneClock--codespaces
Python tool for relative mutation rate of different genes across viral strains.
nagshivank/Microbial-Genomic-Analysis
A comprehensive microbial genomic analysis pipeline that includes quality control, gene prediction, annotation, and comparative genomic analysis for identifying and visualizing key genetic features in microbial genomes.
Orpowell/SABAT
A toolkit for identifying gene homologs in closely related species.
Orpowell/SABAT_NF
A NextFlow pipeline for the annotation of gene homologs using SABAT.
sadovsd/platypus-genome-annotation-comparison
Analysis of different versions of Platypus Gene Annotations from the Ensembl database. Includes a basic frontend to present data, hosted using a Miami class server. The backend is a database containing gene data that a user can query through the frontend.