Pinned Repositories
BacterialGenomeAnalysis
Automated pipeline for whole bacterial genome analysis based on snakemake
denovo-eval
Script for comparing multiple de novo tools
denovopipeline
Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
MALDIfingerprint
Fingerprint Method to compare antibody samples with MALDI-TOF MS
pod5viz
Visualizing ONT pod5 files
pytorch-lightning
Pretrain, finetune and deploy AI models on multiple GPUs, TPUs with zero code changes.
dorado
Oxford Nanopore's Basecaller
breakfast
breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitutions).
wandb
The AI developer platform. Use Weights & Biases to train and fine-tune models, and manage models from experimentation to production.
seq2squiggle
End-to-end simulation of nanopore sequencing signals with feed-forward transformers
denisbeslic's Repositories
denisbeslic/denovopipeline
Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
denisbeslic/BacterialGenomeAnalysis
Automated pipeline for whole bacterial genome analysis based on snakemake
denisbeslic/denovo-eval
Script for comparing multiple de novo tools
denisbeslic/MALDIfingerprint
Fingerprint Method to compare antibody samples with MALDI-TOF MS
denisbeslic/pod5viz
Visualizing ONT pod5 files